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(-) Description

Title :  CRYSTAL STRUCTURE OF CALCIUM-BOUND ANNEXIN (SM)1
 
Authors :  A. Hofmann
Date :  23 Aug 13  (Deposition) - 26 Feb 14  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Annexin, Calcium-Binding Protein, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Y. Leow, C. Willis, A. Osman, L. Mason, A. Simon, B. J. Smith, R. B. Gasser, M. K. Jones, A. Hofmann
Crystal Structure And Immunological Properties Of The First Annexin From Schistosoma Mansoni: Insights Into The Structural Integrity Of The Schistosomal Tegument.
Febs J. V. 281 1209 2014
PubMed-ID: 24428567  |  Reference-DOI: 10.1111/FEBS.12700

(-) Compounds

Molecule 1 - ANNEXIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ANNEXIN (SM)1, SMP_074150.1
    Organism Common: BLOOD FLUKE
    Organism Scientific: SCHISTOSOMA MANSONI
    Organism Taxid: 6183

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 13)

Asymmetric Unit (1, 13)
No.NameCountTypeFull Name
1CA13Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:49 , GLY A:51 , GLY A:53 , THR A:54 , ASP A:93 , HOH A:540BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWAREMET A:121 , GLY A:123 , GLY A:125 , GLU A:173 , HOH A:538BINDING SITE FOR RESIDUE CA A 402
03AC3SOFTWARELYS A:171 , THR A:174 , GLU A:179BINDING SITE FOR RESIDUE CA A 403
04AC4SOFTWAREMET A:302 , GLY A:304 , LEU A:305 , ASP A:346BINDING SITE FOR RESIDUE CA A 404
05AC5SOFTWAREGLY A:306 , ASP A:346 , HOH A:506BINDING SITE FOR RESIDUE CA A 405
06AC6SOFTWARETHR A:54 , GLU A:56BINDING SITE FOR RESIDUE CA A 406
07AC7SOFTWAREASP A:128 , ASP A:275 , HOH A:502 , HOH A:519 , HOH A:552 , ASP B:275 , CA B:405BINDING SITE FOR RESIDUE CA B 401
08AC8SOFTWAREMET B:49 , GLY B:51 , GLY B:53 , ASP B:93 , HOH B:552BINDING SITE FOR RESIDUE CA B 402
09AC9SOFTWAREHOH A:556 , MET B:121 , GLY B:123 , GLY B:125 , GLU B:173BINDING SITE FOR RESIDUE CA B 403
10BC1SOFTWARELYS B:171 , THR B:174 , GLU B:179 , HOH B:535 , HOH B:550BINDING SITE FOR RESIDUE CA B 404
11BC2SOFTWAREASP A:275 , ASP B:128 , ASP B:275 , CA B:401 , HOH B:501 , HOH B:533BINDING SITE FOR RESIDUE CA B 405
12BC3SOFTWAREMET B:302 , ASP B:346BINDING SITE FOR RESIDUE CA B 406
13BC4SOFTWAREGLY B:306 , ASP B:309 , ASP B:346BINDING SITE FOR RESIDUE CA B 407

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:175 -B:175

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MDV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MDV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MDV)

(-) Exons   (0, 0)

(no "Exon" information available for 4MDV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:351
                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..................hhhhhhhhhhhhh.....hhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mdv A   6 ISEFGITRSLIHSFDPHGKHYRPTIKPTTGFSASADAERLHRSMKGPGTNELAIINILARRTNYERQEICQSYKSLYKQDLKDDLKSDTSGDFRKVLCQLIVDTPYMLAKSLYYAMKGLGTNDRVLIEIFTTLWNDEMKAVADAYKQVLKDKGSEESERSLVTDMKKETCGDYEYALLSLVQAERDDIPILQLKAIPDKGVNSIINHELAEADAKDLYASERRITRVICNRTPYQLYLTSEIYFKMYGKTLLEHIESETSGDYRKLLVAVLRYAIDRPSLIAEWLHDSMAGLGTKDYALMRLLITRSEIDLQDIMDAYESIYGKSLLNAVKDDTSGDYRRTLCVLMGEIYN 364
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225|      243       253       263       273       283       293       303       313       323       333       343       353       363 
                                                                                                                                                                                                                                                     225|                                                                                                                                  
                                                                                                                                                                                                                                                      234                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..................hhhhhhhhhhhhh.....hhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mdv B   6 ISEFGITRSLIHSFDPHGKHYRPTIKPTTGFSASADAERLHRSMKGPGTNELAIINILARRTNYERQEICQSYKSLYKQDLKDDLKSDTSGDFRKVLCQLIVDTPYMLAKSLYYAMKGLGTNDRVLIEIFTTLWNDEMKAVADAYKQVLKDKGSEESERSLVTDMKKETCGDYEYALLSLVQAERDDIPILQLKAIPDKGVNSIINHELAEADAKDLYAERRITRVICNRTPYQLYLTSEIYFKMYGKTLLEHIESETSGDYRKLLVAVLRYAIDRPSLIAEWLHDSMAGLGTKDYALMRLLITRSEIDLQDIMDAYESIYGKSLLNAVKDDTSGDYRRTLCVLMGEIY 363
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       234       244       254       264       274       284       294       304       314       324       334       344       354         
                                                                                                                                                                                                                                                    224|                                                                                                                                 
                                                                                                                                                                                                                                                     234
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MDV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MDV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MDV)

(-) Gene Ontology  (4, 4)

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