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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  MECHANISTIC IMPLICATIONS FOR THE BACTERIAL PRIMOSOME ASSEMBLY OF THE STRUCTURE OF A HELICASE-HELICASE LOADER COMPLEX
 
Authors :  B. Liu, W. K. Eliason, T. A. Steitz
Date :  07 Aug 13  (Deposition) - 25 Sep 13  (Release) - 02 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  6.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Keywords :  Primase, Helicase Loader, Dnab, Dnag, Dnai, Dna Replication, Replication (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Liu, W. K. Eliason, T. A. Steitz
Structure Of A Helicase-Helicase Loader Complex Reveals Insights Into The Mechanism Of Bacterial Primosome Assembly
Nat Commun V. 4 2495 2013
PubMed-ID: 24048025  |  Reference-DOI: 10.1038/NCOMMS3495

(-) Compounds

Molecule 1 - REPLICATIVE HELICASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21D(+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: DNAB
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Synonym: REPLICATIVE HELICASE DNAB
 
Molecule 2 - DNA PRIMASE
    Chains: G, H, I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21D(+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: HELICASE BINDING DOMAIN (UNP RESIDUES 455-597)
    Gene: DNAG
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Synonym: DNAG PRIMASE
 
Molecule 3 - PRIMOSOMAL PROTEIN DNAI
    Chains: J, K, L, M, N, O
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21D(+)
    Expression System Strain: B834(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BSU28980, DNAI, YTXA
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS
    Organism Taxid: 224308
    Strain: 168
    Synonym: HELICASE LOADER DNAI

 Structural Features

(-) Chains, Units

  123456789101112131415
Asymmetric/Biological Unit : ABCDEFGHIJKLMNO

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric/Biological Unit (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4M4W)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M4W)

(-) Cis Peptide Bonds  (76, 76)

Asymmetric/Biological Unit
No.Residues
1Asp A:27 -Pro A:28
2Arg A:61 -Gly A:62
3Gly A:62 -Glu A:63
4Glu A:63 -Pro A:64
5Glu A:103 -Tyr A:104
6Tyr A:104 -Tyr A:105
7Glu A:133 -Asp A:134
8Thr A:184 -Gly A:185
9Gly A:199 -Phe A:200
10Gln A:261 -Asn A:262
11Arg A:374 -Pro A:375
12Asp B:27 -Pro B:28
13Arg B:61 -Gly B:62
14Gly B:62 -Glu B:63
15Glu B:63 -Pro B:64
16Glu B:103 -Tyr B:104
17Tyr B:104 -Tyr B:105
18Glu B:133 -Asp B:134
19Thr B:184 -Gly B:185
20Gly B:199 -Phe B:200
21Gln B:261 -Asn B:262
22Arg B:374 -Pro B:375
23Asp C:27 -Pro C:28
24Arg C:61 -Gly C:62
25Gly C:62 -Glu C:63
26Glu C:63 -Pro C:64
27Glu C:103 -Tyr C:104
28Tyr C:104 -Tyr C:105
29Glu C:133 -Asp C:134
30Thr C:184 -Gly C:185
31Gly C:199 -Phe C:200
32Gln C:261 -Asn C:262
33Arg C:374 -Pro C:375
34Asp D:27 -Pro D:28
35Arg D:61 -Gly D:62
36Gly D:62 -Glu D:63
37Glu D:63 -Pro D:64
38Glu D:103 -Tyr D:104
39Tyr D:104 -Tyr D:105
40Glu D:133 -Asp D:134
41Thr D:184 -Gly D:185
42Gly D:199 -Phe D:200
43Gln D:261 -Asn D:262
44Arg D:374 -Pro D:375
45Asp E:27 -Pro E:28
46Arg E:61 -Gly E:62
47Gly E:62 -Glu E:63
48Glu E:63 -Pro E:64
49Glu E:103 -Tyr E:104
50Tyr E:104 -Tyr E:105
51Glu E:133 -Asp E:134
52Thr E:184 -Gly E:185
53Gly E:199 -Phe E:200
54Gln E:261 -Asn E:262
55Arg E:374 -Pro E:375
56Asp F:27 -Pro F:28
57Arg F:61 -Gly F:62
58Gly F:62 -Glu F:63
59Glu F:63 -Pro F:64
60Glu F:103 -Tyr F:104
61Tyr F:104 -Tyr F:105
62Glu F:133 -Asp F:134
63Thr F:184 -Gly F:185
64Gly F:199 -Phe F:200
65Gln F:261 -Asn F:262
66Arg F:374 -Pro F:375
67Gly G:486 -Gly G:487
68Gly G:487 -Arg G:488
69Arg G:519 -Ile G:520
70Gly H:486 -Gly H:487
71Gly H:487 -Arg H:488
72Arg H:519 -Ile H:520
73Gly I:486 -Gly I:487
74Gly I:487 -Arg I:488
75Arg I:519 -Ile I:520
76Tyr L:69 -Cys L:70

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M4W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M4W)

(-) Exons   (0, 0)

(no "Exon" information available for 4M4W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh..hhhhhhhhh.........hhhhhhhhhh........hhhhhhh............hhhhhhh................hhhhhhhhhhhhhhhhhhhhh.......hhhhhhh..............hhhhhhhhh..........ee.....hhhhhh..............eee....hhhhhh................................................hhhhhh..hhhhhh......eee..........hhhhhhh.............ee..........................eee........eee.eee......eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w A  15 EAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTREDEIDVLLDEADRKIMEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQEVSEISRSLKALARELEVPVIALSQLRPMMSDIRESGSIEQDADIVAFLYEIIIAKQRNGPVGTVQLAFIKEYNKFVNL 441
                                    24        34        44        54        64        74        84        94       104       114       124       134       144    || 187       197       207       217       227       237       247       257       267       277       287       297       307       317       338       348       358    || 378       388       413       423       433        
                                                                                                                                                                149|                                                                                                                                            326|                      363|                    397|                            
                                                                                                                                                                 183                                                                                                                                             338                       374                     413                            


Chain B from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhh....hhhhhhh.........hhhhhhhhhh........hhhhhhhhhhhh.hhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh............................eee............hhhhh.........ee.........hhhhhh.......................hhhhh....................hhhhhh..........ee............hhhhhhhhhh...............................eee....eeee....................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w B  15 EAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTREDEIDVLLDEADRKIMEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQEVSEISRSLKALARELEVPVIALSQLRPMMSDIRESGSIEQDADIVAFLYEIIIAKQRNGPVGTVQLAFIKEYNKFVNL 441
                                    24        34        44        54        64        74        84        94       104       114       124       134       144    || 187       197       207       217       227       237       247       257       267       277       287       297       307       317       338       348       358    || 378       388       413       423       433        
                                                                                                                                                                149|                                                                                                                                            326|                      363|                    397|                            
                                                                                                                                                                 183                                                                                                                                             338                       374                     413                            


Chain C from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhh.........hhhhhhhhhh.........hhhhhhhhhhh........hhhhhh..............hhhhhh.hhhhhhhhhhh.............hhhhhh............................ee.........hhhhhhhhh............ee.....hhhhh..........................................................hhhhhhh....ee.........hhhhh....hhhhhhh.eee.......hhhhhh.................ee..........ee.eee......eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w C  15 EAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTREDEIDVLLDEADRKIMEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQEVSEISRSLKALARELEVPVIALSQLRPMMSDIRESGSIEQDADIVAFLYEIIIAKQRNGPVGTVQLAFIKEYNKFVNL 441
                                    24        34        44        54        64        74        84        94       104       114       124       134       144    || 187       197       207       217       227       237       247       257       267       277       287       297       307       317       338       348       358    || 378       388       413       423       433        
                                                                                                                                                                149|                                                                                                                                            326|                      363|                    397|                            
                                                                                                                                                                 183                                                                                                                                             338                       374                     413                            


Chain D from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhh.hhhhh......hhhhhhhhhhh........hhhhhhhhh.hhhhh......hhhhhh.........hhhhhhhhhhhhhh..hhhhh.hhhhhh........hhhhhh..........................ee........hhhhhhhhh.......................hhhhhhhhhh........................................hhhhhhhhhhhhh..........hhhhh.........hhhhhhh.....ee.......hhhhh..........ee................................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w D  15 EAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTREDEIDVLLDEADRKIMEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQEVSEISRSLKALARELEVPVIALSQLRPMMSDIRESGSIEQDADIVAFLYEIIIAKQRNGPVGTVQLAFIKEYNKFVNL 441
                                    24        34        44        54        64        74        84        94       104       114       124       134       144    || 187       197       207       217       227       237       247       257       267       277       287       297       307       317       338       348       358    || 378       388       413       423       433        
                                                                                                                                                                149|                                                                                                                                            326|                      363|                    397|                            
                                                                                                                                                                 183                                                                                                                                             338                       374                     413                            


Chain E from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh................hhhhh.hhhhhhhhhhh.hhhhh.....hhhhhh...........hhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh..........hhhhh.........eeeeee........hhhhh....................hhhhhh..hhhhh.............hhhhhh.......................hhhhhh..hhhhh......eee........hhhhhhhhh........eeee.......................eee...................ee......ee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w E  15 EAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTREDEIDVLLDEADRKIMEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQEVSEISRSLKALARELEVPVIALSQLRPMMSDIRESGSIEQDADIVAFLYEIIIAKQRNGPVGTVQLAFIKEYNKFVNL 441
                                    24        34        44        54        64        74        84        94       104       114       124       134       144    || 187       197       207       217       227       237       247       257       267       277       287       297       307       317       338       348       358    || 378       388       413       423       433        
                                                                                                                                                                149|                                                                                                                                            326|                      363|                    397|                            
                                                                                                                                                                 183                                                                                                                                             338                       374                     413                            


Chain F from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh.....hhhhhh........hhhhhhhhhhhhhh.....hhhhhhhhhhhh.......hhhhhhhhhh..............hhhhhhh...hhhhhhhhh.......hhhhhhhhhh...........................ee..ee.....hhhhhh...............ee......hhhhhh.......................................ee.......hhhhhh............eee........hhhhhhhhhhhhhh....eee.........................ee..................ee......ee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w F  15 EAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTREDEIDVLLDEADRKIMEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQEVSEISRSLKALARELEVPVIALSQLRPMMSDIRESGSIEQDADIVAFLYEIIIAKQRNGPVGTVQLAFIKEYNKFVNL 441
                                    24        34        44        54        64        74        84        94       104       114       124       134       144    || 187       197       207       217       227       237       247       257       267       277       287       297       307       317       338       348       358    || 378       388       413       423       433        
                                                                                                                                                                149|                                                                                                                                            326|                      363|                    397|                            
                                                                                                                                                                 183                                                                                                                                             338                       374                     413                            


Chain G from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh..............hhhhhhhh.....hhhhhhhhhhhh.....................hhhhhhhhhh.........hhhhhhhhhhh.............hhhhhhh.....hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m4w G 456 LLPAFQNAERLLLAHmmRSRDVALVVQERIGGRFNIEEHRALAAYIYAFYEEGHEADPGALISRIPGELQPLASELSLLLIADDVSEQELEDYIRHVLNRPKWLmLKVKEQEKTEAERRKDFLTAARIAKEmIEmKKm 593
                                   465     ||475       485       495       505       515       525       535       545       555    |  565       575       585 |  |  |
                                         471-MSE                                                                                  560-MSE                    587-MSE |
                                          472-MSE                                                                                                               590-MSE
                                                                                                                                                                   593-MSE


Chain H from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh..hhhhhhh..hhhhhhh...............................................hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m4w H 456 LLPAFQNAERLLLAHmmRSRDVALVVQERIGGRFNIEEHRALAAYIYAFYEEGHEADPGALISRIPGELQPLASELSLLLIADDVSEQELEDYIRHVLNRPKWLmLKVKEQEKTEAERRKDFLTAARIAKEmIEmKKm 593
                                   465     ||475       485       495       505       515       525       535       545       555    |  565       575       585 |  |  |
                                         471-MSE                                                                                  560-MSE                    587-MSE |
                                          472-MSE                                                                                                               590-MSE
                                                                                                                                                                   593-MSE


Chain I from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh..............hhhhhhh........hhhhhhhh..............................................hhhhhhhhhhhhhh...hhhhhh.................hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m4w I 456 LLPAFQNAERLLLAHmmRSRDVALVVQERIGGRFNIEEHRALAAYIYAFYEEGHEADPGALISRIPGELQPLASELSLLLIADDVSEQELEDYIRHVLNRPKWLmLKVKEQEKTEAERRKDFLTAARIAKEmIEmKKm 593
                                   465     ||475       485       495       505       515       525       535       545       555    |  565       575       585 |  |  |
                                         471-MSE                                                                                  560-MSE                    587-MSE |
                                          472-MSE                                                                                                               590-MSE
                                                                                                                                                                   593-MSE


Chain J from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh....hhhhhhhhhhhhhhhhhh......eeeeeeee..eeeeeeee........eee...........................................eee...........hhhhhh........eeeee.........................eeeee............hhhhhhhh.......eee.......................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w J  32 QDVQAFLKENEEVIDQKMIEKSLNKLYEYIEQSKNCSGYHPKLVVNGRSIDIEYYECKKQQSLMKSMYIQQDLLGATFQQVDISDPSRLAMFQHVTDFLKSYNETGKGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVPEFVRELKNSQTLEEKLNMVKTTPVLMLDDIGAESWVRDEVIGTVLQHRMSQQLPTFFSSNFSPDELKHHFTYSQEVKAARLMERILYLAAPIRLDGENRR 309
                                    41        51        61      ||84        94      |113       123       133       143       153       163       173       183       193       203   ||  216       226       239       249       259       269       284       294       304     
                                                               68|                101|                                                                                             207|                    234|                                     278|                         
                                                                82                 111                                                                                              211                     238                                      284                         


Chain K from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...........hhhhhhhhhhh......eeeeeeee..eeeeeeee.........................................................ee......hhhhh..hhhhhhhhh.......hhhhhhhhh........hhhhh..........................................ee......................hhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w K  32 QDVQAFLKENEEVIDQKMIEKSLNKLYEYIEQSKNCSGYHPKLVVNGRSIDIEYYECPVKKQQSLMKSMYIQQDLLGATFQQVDISDPSRLAMFQHVTDFLKSYNETGKGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVPEFVRELKNSLQDQTLEEKLNMVKTTPVLMLDDIGAESTSWVRDEVIGTVLQHRMSQQLPTFFSSNFSPDELKHHFTYEKEEVKAARLMERILYLAAPIRLD 304
                                    41        51        61      ||84        94       104|      121       131       141       151       161       171       181       191       201       211       221       231   ||  242       252       262       272   ||  286       296        
                                                               68|                   104|                                                                                                                        235|                                    276|                       
                                                                82                    112                                                                                                                         237                                     281                       


Chain L from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee..eeeeeeee...................................hhhhhhhhh...........eeee.............hhhhh.........hhhhhh......................ee........hhhhhh..............eee....................hhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w L  32 QDVQAFLKENEEVIDQKMIEKSLNKLYEYIEQSKNCSYCGYHPKLVVNGRSIDIEYYECKKQQSLMKSMYIQQDLLGATFQQVDISDPSRLAMFQHVTDFLKSYNETGKGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVPEFVRELKNSQTLEEKLNMVKTTPVLMLDDIGAESWVRDEVIGTVLQHRMSQQLPTFFSSNFSPDELKHHFTYSQEVKAARLMERILYLAAPIRLDGENRR 309
                                    41        51        61        82        92       111       121       131       141       151       161       171       181       191       201     ||214       224       234|      247       257       267       277||     292       302       
                                                                 70|                101|                                                                                             207|                    234|                                     278|                         
                                                                  82                 111                                                                                              211                     238                                      284                         


Chain M from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeeee..eeeeeeee.............................hhhhhhhhhhh.............ee...............................hhhhh.........................ee..............................ee....hhhhhh.......................ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w M  32 QDVQAFLKENEEVIDQKMIEKSLNKLYEYIEQSKNCSYCGYHPKLVVNGRSIDIEYYECKQQSLMKSMYIQQDLLGATFQQVDISDPSRLAMFQHVTDFLKSYNETGKGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVPEFVRELKNSLQDQTLEEKLNMVKTTPVLMLDDIGAESTSWVRDEVIGTVLQHRMSQQLPTFFSSNFSPDELKHHFTYEKEEVKAARLMERILYLAAPIRLD 304
                                    41        51        61        82        92       112       122       132       142       152       162       172       182       192       202       212       222       232  ||   243       253       263       273  ||   287       297       
                                                                 70|                101|                                                                                                                        235|                                    276|                       
                                                                  82                 112                                                                                                                         237                                     281                       


Chain N from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh....hhhhhhhhhhhhhhhhhh...........eeeee..eeeee......................................................eee.............hhhhh........eeee..........................eeee...........hhhhhh..........eee...hhhhhhh................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w N  32 QDVQAFLKENEEVIDQKMIEKSLNKLYEYIEQSKNCSYCGYHPKLVVNGRSIDIEYKKQQSLMKSMYIQQDLLGATFQQVDISDPSRLAMFQHVTDFLKSYNETGKGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVPEFVRELKNSQTLEEKLNMVKTTPVLMLDDIGAESWVRDEVIGTVLQHRMSQQLPTFFSSNFSPDELKHHFTYSQEVKAARLMERILYLAAPIRLDGENRR 309
                                    41        51        61        82        92     ||114       124       134       144       154       164       174       184       194       204  ||   217       227      |240       250       260       270       285       295       305    
                                                                 70|              98|                                                                                             207|                    234|                                     278|                         
                                                                  82              111                                                                                              211                     238                                      284                         


Chain O from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh....hhhhhhhhhhhhhhhhhh........eeeeeeee..eeeeeeee...........ee.....................hhhhhhhhhh.............eeee.......hhhhhhhh.........eeehhhhhh.........hhhhh..........eeeeee...........................eeee...hhhhhh.......................eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4w O  32 QDVQAFLKENEEVIDQKMIEKSLNKLYEYIEQSKNCSYCGYHPKLVVNGRSIDIEYYECPVKKQQSLMKSMYIQQDLLGATFQQVDISDPSRLAMFQHVTDFLKSYNETGKGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVPEFVRELKNSLQDQTLEEKLNMVKTTPVLMLDDIGAESTSWVRDEVIGTVLQHRMSQQLPTFFSSNFSPDELKHHFTYEKEEVKAARLMERILYLAAPIRLD 304
                                    41        51        61        82        92       102 ||    119       129       139       149       159       169       179       189       199       209       219       229     ||240       250       260       270     ||284       294       304
                                                                 70|                   104|                                                                                                                        235|                                    276|                       
                                                                  82                    112                                                                                                                         237                                     281
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M4W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M4W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M4W)

(-) Gene Ontology  (20, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:374 - Pro A:375   [ RasMol ]  
    Arg A:61 - Gly A:62   [ RasMol ]  
    Arg B:374 - Pro B:375   [ RasMol ]  
    Arg B:61 - Gly B:62   [ RasMol ]  
    Arg C:374 - Pro C:375   [ RasMol ]  
    Arg C:61 - Gly C:62   [ RasMol ]  
    Arg D:374 - Pro D:375   [ RasMol ]  
    Arg D:61 - Gly D:62   [ RasMol ]  
    Arg E:374 - Pro E:375   [ RasMol ]  
    Arg E:61 - Gly E:62   [ RasMol ]  
    Arg F:374 - Pro F:375   [ RasMol ]  
    Arg F:61 - Gly F:62   [ RasMol ]  
    Arg G:519 - Ile G:520   [ RasMol ]  
    Arg H:519 - Ile H:520   [ RasMol ]  
    Arg I:519 - Ile I:520   [ RasMol ]  
    Asp A:27 - Pro A:28   [ RasMol ]  
    Asp B:27 - Pro B:28   [ RasMol ]  
    Asp C:27 - Pro C:28   [ RasMol ]  
    Asp D:27 - Pro D:28   [ RasMol ]  
    Asp E:27 - Pro E:28   [ RasMol ]  
    Asp F:27 - Pro F:28   [ RasMol ]  
    Gln A:261 - Asn A:262   [ RasMol ]  
    Gln B:261 - Asn B:262   [ RasMol ]  
    Gln C:261 - Asn C:262   [ RasMol ]  
    Gln D:261 - Asn D:262   [ RasMol ]  
    Gln E:261 - Asn E:262   [ RasMol ]  
    Gln F:261 - Asn F:262   [ RasMol ]  
    Glu A:103 - Tyr A:104   [ RasMol ]  
    Glu A:133 - Asp A:134   [ RasMol ]  
    Glu A:63 - Pro A:64   [ RasMol ]  
    Glu B:103 - Tyr B:104   [ RasMol ]  
    Glu B:133 - Asp B:134   [ RasMol ]  
    Glu B:63 - Pro B:64   [ RasMol ]  
    Glu C:103 - Tyr C:104   [ RasMol ]  
    Glu C:133 - Asp C:134   [ RasMol ]  
    Glu C:63 - Pro C:64   [ RasMol ]  
    Glu D:103 - Tyr D:104   [ RasMol ]  
    Glu D:133 - Asp D:134   [ RasMol ]  
    Glu D:63 - Pro D:64   [ RasMol ]  
    Glu E:103 - Tyr E:104   [ RasMol ]  
    Glu E:133 - Asp E:134   [ RasMol ]  
    Glu E:63 - Pro E:64   [ RasMol ]  
    Glu F:103 - Tyr F:104   [ RasMol ]  
    Glu F:133 - Asp F:134   [ RasMol ]  
    Glu F:63 - Pro F:64   [ RasMol ]  
    Gly A:199 - Phe A:200   [ RasMol ]  
    Gly A:62 - Glu A:63   [ RasMol ]  
    Gly B:199 - Phe B:200   [ RasMol ]  
    Gly B:62 - Glu B:63   [ RasMol ]  
    Gly C:199 - Phe C:200   [ RasMol ]  
    Gly C:62 - Glu C:63   [ RasMol ]  
    Gly D:199 - Phe D:200   [ RasMol ]  
    Gly D:62 - Glu D:63   [ RasMol ]  
    Gly E:199 - Phe E:200   [ RasMol ]  
    Gly E:62 - Glu E:63   [ RasMol ]  
    Gly F:199 - Phe F:200   [ RasMol ]  
    Gly F:62 - Glu F:63   [ RasMol ]  
    Gly G:486 - Gly G:487   [ RasMol ]  
    Gly G:487 - Arg G:488   [ RasMol ]  
    Gly H:486 - Gly H:487   [ RasMol ]  
    Gly H:487 - Arg H:488   [ RasMol ]  
    Gly I:486 - Gly I:487   [ RasMol ]  
    Gly I:487 - Arg I:488   [ RasMol ]  
    Thr A:184 - Gly A:185   [ RasMol ]  
    Thr B:184 - Gly B:185   [ RasMol ]  
    Thr C:184 - Gly C:185   [ RasMol ]  
    Thr D:184 - Gly D:185   [ RasMol ]  
    Thr E:184 - Gly E:185   [ RasMol ]  
    Thr F:184 - Gly F:185   [ RasMol ]  
    Tyr A:104 - Tyr A:105   [ RasMol ]  
    Tyr B:104 - Tyr B:105   [ RasMol ]  
    Tyr C:104 - Tyr C:105   [ RasMol ]  
    Tyr D:104 - Tyr D:105   [ RasMol ]  
    Tyr E:104 - Tyr E:105   [ RasMol ]  
    Tyr F:104 - Tyr F:105   [ RasMol ]  
    Tyr L:69 - Cys L:70   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DNAG_GEOSE | Q9X4D0: 1d0q 1z8s 2r6a 2r6c
        DNAI_BACSU | P06567: 2k7r
UniProtKB/TrEMBL
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(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4M4W)