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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF THE RUTHENIUM COMPLEX [RU(TAP)2(DPPZ-{ME2})]2+ BOUND TO D(CCGGTACCGG)
 
Authors :  H. Niyazi, S. Teixeira, E. Mitchell, T. Forsyth, C. Cardin
Date :  06 Aug 13  (Deposition) - 24 Sep 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Intercalation, Semi-Intercalation, Minor-Groove Binder, Light-Switch, Bending, Kinking, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H Niyazi, S Teixeira, E Mitchell, T Forsyth, C Cardin
X-Ray Crystal Structure Of The Ruthenium Complex [Ru(Tap)2(Dppz-{Me2})]2+ Bound To D(Ccggtaccgg)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SYNTHETIC DNA CCGGTACCGG
    Chains: A
    Engineered: YES
    Other Details: PURCHASED SYNTHETIC CONSTRUCT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1BA1Ligand/IonBARIUM ION
2RML2Ligand/Ion(11,12-DIMETHYLDIPYRIDO[3,2-A:2',3'-C]PHENAZINE-KAPPA~2~N~4~,N~5~)[BIS(PYRAZINO[2,3-F]QUINOXALINE-KAPPA~2~N~1~,N~10~)]RUTHENIUM(2+)
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2RML4Ligand/Ion(11,12-DIMETHYLDIPYRIDO[3,2-A:2',3'-C]PHENAZINE-KAPPA~2~N~4~,N~5~)[BIS(PYRAZINO[2,3-F]QUINOXALINE-KAPPA~2~N~1~,N~10~)]RUTHENIUM(2+)

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:1 , DC A:2 , DG A:3 , DG A:4 , DC A:7 , DC A:8 , DG A:9 , DG A:10BINDING SITE FOR RESIDUE RML A 101
2AC2SOFTWAREDT A:5 , DA A:6 , DC A:7BINDING SITE FOR RESIDUE RML A 102
3AC3SOFTWAREDG A:3 , DG A:4 , DT A:5BINDING SITE FOR RESIDUE BA A 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M3I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4M3I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  4m3i A  1 CCGGTACCGG 10
                                    10
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(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M3I)

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(-) Gene Ontology  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

3qrn X-RAY CRYSTAL STRUCTURE OF THE RUTHENIUM COMPLEX [RU(TAP) 2(DPPZ)]2+ BOUND TO D(TCGGCGCCGA)AT HIGH RESOLUTION
3u38 INTERCALATION OF LAMBDA-[RU(PHEN)2(DPPZ)]2+ INTO D(CCGGTACCGG)2
3uya X-RAY CRYSTAL STRUCTURE OF THE RUTHENIUM COMPLEX [RU(TAP) 2(DPPZ)]2+ BOUND TO D(CCGGTACCGG)
3uyb X-RAY CRYSTAL STRUCTURE OF THE RUTHENIUM COMPLEX [RU(TAP) 2(DPPZ)]2+ BOUND TO D(TCGGTACCGA)
4e7y LAMBDA-[RU(PHEN)2(DPPZ)]2+ BOUND TO CCGGATCCGG