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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF THE RUTHENIUM COMPLEX [RU(TAP)2(DPPZ)]2+ BOUND TO D(TCGGTACCGA)
 
Authors :  H. N. Niyazi, S. C. M. Texeira, E. P. Mitchell, J. C. Cardin, V. T. Forsyth
Date :  06 Dec 11  (Deposition) - 16 Jan 13  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Dna-Ruthenium Complex, Semiintercalation, Intercalation, Minor Groove Interaction, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. N. Niyazi, K. O'Sullivan, S. C. M. Texeira, E. P. Mitchell, J. M. Kelly, J. C. Cardin, V. T. Forsyth
Crystal Structure Of Lambda-[Ru(Tap)2(Dppz)]2+ With D(Tcggtaccga)2 Displaying Kinking Of Dna Via Semiintercalation.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3'
    ChainsA
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1BA1Ligand/IonBARIUM ION
2RKL2Ligand/IonRU(TAP)2(DPPZ) COMPLEX
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2RKL4Ligand/IonRU(TAP)2(DPPZ) COMPLEX

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDT A:1 , DC A:2 , DG A:4 , DT A:5 , DA A:6 , DC A:7 , HOH A:14 , HOH A:15 , HOH A:58 , HOH A:82 , HOH A:84BINDING SITE FOR RESIDUE RKL A 11
2AC2SOFTWAREDT A:1 , DC A:2 , DG A:3 , DG A:4 , DC A:7 , DC A:8 , DG A:9 , DA A:10 , HOH A:16 , HOH A:19 , HOH A:41 , HOH A:51BINDING SITE FOR RESIDUE RKL A 12
3AC3SOFTWAREDG A:3 , DG A:4 , DT A:5 , HOH A:20 , HOH A:28 , HOH A:35 , HOH A:45 , HOH A:49BINDING SITE FOR RESIDUE BA A 13

(-) SS Bonds  (0, 0)

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(-) Sequences/Alignments

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Chain A from PDB  Type:DNA  Length:10
                                         
                  3uyb A  1 TCGGTACCGA 10
                                    10

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

3gom BARIUM BOUND TO THE HOLLIDAY JUNCTION SEQUENCE D(TCGGCGCCGA)4.
3qf8 X-RAY CRYSTAL STRUCTURE OF THE RUTHENIUM COMPLEX [RU(TAP) 2(DPPZ)]2+ BOUND TO D(TCGGCGCCGA) AT MEDIUM RESOLUTION.
3qrn X-RAY CRYSTAL STRUCTURE OF THE RUTHENIUM COMPLEX [RU(TAP) 2(DPPZ)]2+ BOUND TO D(TCGGCGCCGA)AT HIGH RESOLUTION.
3uya