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(-) Description

Title :  INSIGHT INTO HIGHLY CONSERVED H1 SUBTYPE-SPECIFIC EPITOPES IN INFLUENZA VIRUS HEMAGGLUTININ
 
Authors :  K. H. Kim, K. J. Cho, S. Kim, J. H. Seok, J. -H. Lee
Date :  26 Jul 13  (Deposition) - 09 Apr 14  (Release) - 09 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,D,G,J  (1x)
Biol. Unit 2:  B,C,E,F  (1x)
Biol. Unit 3:  H,I,K,L  (1x)
Keywords :  Influenza Virus, Immune System, Hemagglutinin, Antibody (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. J. Cho, K. W. Hong, S. H. Kim, J. H. Seok, S. Kim, J. -H. Lee, X. Saelens, K. H. Kim
Insight Into Highly Conserved H1 Subtype-Specific Epitopes In Influenza Virus Hemagglutinin
Plos One V. 9 89803 2014
PubMed-ID: 24587046  |  Reference-DOI: 10.1371/JOURNAL.PONE.0089803

(-) Compounds

Molecule 1 - HEMAGGLUTININ
    Chains: A, D, G, J
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: PACGP67A
    Expression System Strain: HI5
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 18-520
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 644289
    Strain: A/KOREA/01/2009(H1N1)
 
Molecule 2 - MONOCLONAL ANTIBODY H-CHAIN
    Chains: B, E, H, K
    Fragment: FAB FRAGMENT, HEAVY CHAIN
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - MONOCLONAL ANTIBODY L-CHAIN
    Chains: C, F, I, L
    Fragment: FAB FRAGMENT, LIGHT CHAIN
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): A  D  G  J  
Biological Unit 2 (1x):  BC EF      
Biological Unit 3 (1x):        HI KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:52 , CYS A:55BINDING SITE FOR RESIDUE CA A 601
2AC2SOFTWARELEU G:52 , CYS G:55 , CYS G:67 , SER G:69BINDING SITE FOR RESIDUE CA G 601
3AC3SOFTWARELEU J:52 , SER J:69BINDING SITE FOR RESIDUE CA J 601

(-) SS Bonds  (24, 24)

Asymmetric Unit
No.Residues
1A:55 -A:67
2A:90 -A:136
3B:21 -B:95
4B:148 -B:204
5C:22 -C:91
6C:137 -C:194
7D:55 -D:67
8D:90 -D:136
9E:21 -E:95
10E:148 -E:204
11F:22 -F:91
12F:137 -F:194
13G:55 -G:67
14G:90 -G:136
15H:21 -H:95
16H:148 -H:204
17I:22 -I:91
18I:137 -I:194
19J:55 -J:67
20J:90 -J:136
21K:21 -K:95
22K:148 -K:204
23L:22 -L:91
24L:137 -L:194

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Phe B:154 -Pro B:155
2Glu B:156 -Pro B:157
3Ala C:115 -Pro C:116
4Tyr C:143 -Pro C:144
5Phe E:154 -Pro E:155
6Glu E:156 -Pro E:157
7Ala F:115 -Pro F:116
8Tyr F:143 -Pro F:144
9Phe H:154 -Pro H:155
10Glu H:156 -Pro H:157
11Ala I:115 -Pro I:116
12Tyr I:143 -Pro I:144
13Phe K:154 -Pro K:155
14Glu K:156 -Pro K:157
15Ala L:115 -Pro L:116
16Tyr L:143 -Pro L:144

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LVH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LVH)

(-) Exons   (0, 0)

(no "Exon" information available for 4LVH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhh...........ee................eee.hhhhhhhhh..ee...eee................................eee.....................eeeeeeeeee..hhhhhhh........eee......eee...............eeeeeeeee.............eeee.eeeeeee......................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lvh A  49 PLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTVDDGFLDIWTYNAE 427
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268 ||    421      
                                                                                                                                                                                                                                                       270|             
                                                                                                                                                                                                                                                        414             


Chain B from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............eee...ee........eeeeee.......eee......................ee....ee.eee...hhhhheeeeeee..................ee..........eeeee.......ee..eeeee.......eee..............ee......ee.eee..ee.hhh.......eeee....eeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lvh B   2 KLQQSGGGVVQPGGSLRLSCAASGFTFSDYDMSWIRQAPGKGLEWVSGILGGSERSYYRDSVKGRFTISRDNSRKTLYLQMNSLRAEDTAVYYCARHGSPGYTLYAWDYWGQGTMVTVSSASTKGPSVFPLAPSTSGATAALGCLVKDYFPEPVTVSWNSGALTSSVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKSCAA 222
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  ||   144       154       164       174       184       194       204       214        
                                                                                                                                                              134|                                                                                    
                                                                                                                                                               138                                                                                    


Chain C from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains d4lvhc1 C:1-110 automated matches                                                                             d4lvhc2 C:111-210 automated matches                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........ee......eeeee.............eeeeee..eeeeeeee...ee.......eeee....eeeeee..........ee.................ee..............hhhhhhh.eeeeeee........eeeee.........................eeeeeee.........eeeee......ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lvh C   1 IQMTQSPASLAVSPGQRATITCRASESVSNYGINFINWFQQKPGQPPKLLIYTASNKGTGVPARFSGSGSGTDFTLTINPVEAEDTANYFCQQTKEVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLDEYERHNSYTCEATHKTSTSPIVKSFN 210
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210


Chain D from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhh.................................hhhhhhhhh..eeeeeeee..hhhhhh.............ee..ee..................eeeeee......eeeeeeeee...hhhhhhhhh.....eeee.....eee...............eeeeeeeee....eeeeee...ee...eeeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lvh D  49 PLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDT 270
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268  


Chain E from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee.....eeeeee....hhhhh.eeeeee................................ee....eeeeee...hhhhheeeeeeee.........eeee...eeeee........eeeee.......eeeeeeeeeee....eeee..............ee......eeeeeeeeee.hhh.......eeee....eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lvh E   2 KLQQSGGGVVQPGGSLRLSCAASGFTFSDYDMSWIRQAPGKGLEWVSGILGGSERSYYRDSVKGRFTISRDNSRKTLYLQMNSLRAEDTAVYYCARHGSPGYTLYAWDYWGQGTMVTVSSASTKGPSVFPLAPSTSGATAALGCLVKDYFPEPVTVSWNSGALTSSVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKSCAA 222
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  ||   144       154       164       174       184       194       204       214        
                                                                                                                                                              134|                                                                                    
                                                                                                                                                               138                                                                                    


Chain F from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains d4lvhf1 F:1-110 automated matches                                                                             d4lvhf2 F:111-210 automated matches                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................eeee................eeee.....eeeeee...ee.......eeeee....eeeee..........eee...........................eee..hhhhhhhheeeeeee........eeeee.............ee.........eeeeeeee.........eeeee......ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lvh F   1 IQMTQSPASLAVSPGQRATITCRASESVSNYGINFINWFQQKPGQPPKLLIYTASNKGTGVPARFSGSGSGTDFTLTINPVEAEDTANYFCQQTKEVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLDEYERHNSYTCEATHKTSTSPIVKSFN 210
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210


Chain G from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee...hhhhhhhh................ee..hhhhh....eee.hhhhhhhhh..eeeeeeee.................eeeee....ee....eee.....................eeeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee.............eeee.eeeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lvh G  49 PLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDT 270
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268  


Chain H from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...ee.....eeeeee..........eeeeee............................eeeeee....eeeeee........eeeeeeeee.......eee.....eeeee........eee.........eeeeeeeeeee.....eee..............ee......eeeeeeeeee...........eee............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lvh H   2 KLQQSGGGVVQPGGSLRLSCAASGFTFSDYDMSWIRQAPGKGLEWVSGILGGSERSYYRDSVKGRFTISRDNSRKTLYLQMNSLRAEDTAVYYCARHGSPGYTLYAWDYWGQGTMVTVSSASTKGPSVFPLAPSTSGATAALGCLVKDYFPEPVTVSWNSGALTSSVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKSCAA 222
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  ||   144       154       164       174       184       194       204       214        
                                                                                                                                                              134|                                                                                    
                                                                                                                                                               138                                                                                    


Chain I from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains d4lvhi1 I:1-110 automated matches                                                                             d4lvhi2 I:111-210 automated matches                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................eeee...............eee.........eeee...ee........eee......eeee...........eee.........................ee....hhhhhh..eeeeeeee.......eeeee........................eeeeeeee.........eeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lvh I   1 IQMTQSPASLAVSPGQRATITCRASESVSNYGINFINWFQQKPGQPPKLLIYTASNKGTGVPARFSGSGSGTDFTLTINPVEAEDTANYFCQQTKEVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLDEYERHNSYTCEATHKTSTSPIVKSFN 210
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210


Chain J from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhh...............................eee.hhhhhhhhh..eeeeeee.................................eee..........eeeee......eee.eeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeee........eeeee...eeee..eeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lvh J  49 PLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDT 270
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268  


Chain K from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee.....eeeeee....hhhhh.eeeeee..........ee......ee...........eee....eeeeee...hhhhheeeeeeeee.......ee.......eeee........eeeee...........eeeee.......ee...hhhhh...................ee...hhhhh........eee....eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lvh K   2 KLQQSGGGVVQPGGSLRLSCAASGFTFSDYDMSWIRQAPGKGLEWVSGILGGSERSYYRDSVKGRFTISRDNSRKTLYLQMNSLRAEDTAVYYCARHGSPGYTLYAWDYWGQGTMVTVSSASTKGPSVFPLAPSTSGATAALGCLVKDYFPEPVTVSWNSGALTSSVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKSCAA 222
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  ||   144       154       164       174       184       194       204       214        
                                                                                                                                                              134|                                                                                    
                                                                                                                                                               138                                                                                    


Chain L from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains d4lvhl1 L:1-110 automated matches                                                                            d4lvhl2 L:111-210 automated matches                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee.......eeee.............eeeee..eeeeeeehhhhh........eeeee...eeeeee.............................ee........eeee..hhhhhhh..eeeeeee.......ee...........................eeeeeee.............ee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lvh L   1 IQMTQSPASLAVSPGQRATITCRAESVSNYGINFINWFQQKPGQPPKLLIYTASNKGTGVPARFSGSGSGTDFTLTINPVEAEDTANYFCQQTKEVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLDEYERHNSYTCEATHKTSTSPIVKSFN 210
                                    10        20   ||   31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201         
                                                  24|                                                                                                                                                                                        
                                                   26
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LVH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LVH)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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  4lvh
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        C5MQE6_9INFA | C5MQE6: 4eda 4f15

(-) Related Entries Specified in the PDB File

4eda 4f15