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(-) Description

Title :  MOLECULAR BASIS OF INFECTIVITY OF 2009 PANDEMIC H1N1 INFLUENZA A VIRUSES
 
Authors :  K. H. Kim, K. J. Cho, J. H. Lee, Y. H. Park, T. G. Khan, J. Y. Lee, S. H. Kang, I
Date :  06 May 12  (Deposition) - 15 May 13  (Release) - 15 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.81
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Biol. Unit 4:  J,K,L  (1x)
Keywords :  Influenza Virus, Haemagglutinin, Conformation, Antibody, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. H. Kim, K. J. Cho, J. H. Lee, Y. H. Park, T. G. Khan, J. Y. Lee, S. H. Kang, I. Alam, K. W. Hong, S. H. Kim, S. Unzai, S. Y. Park, C. J. Kim, J. Y. Lee, C. Khan, H. B. Oh, M. S. Chung
Molecular Basis Of Infectivity Of 2009 Pandemic H1N1 Influenza A Viruses
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEMAGGLUTININ
    Chains: A, D, G, J
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: PACGP67A
    Expression System Strain: HI5
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 18-520
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 644289
    Strain: A/KOREA/01/2009(H1N1)
 
Molecule 2 - FAB FRAGMENT, HEAVY CHAIN
    Chains: B, E, H, K
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - FAB FRAGMENT, LIGHT CHAIN
    Chains: C, F, I, L
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABC         
Biological Unit 2 (1x):    DEF      
Biological Unit 3 (1x):       GHI   
Biological Unit 4 (1x):          JKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4F15)

(-) Sites  (0, 0)

(no "Site" information available for 4F15)

(-) SS Bonds  (24, 24)

Asymmetric Unit
No.Residues
1A:55 -A:67
2A:90 -A:136
3B:21 -B:95
4B:148 -B:204
5C:22 -C:91
6C:137 -C:197
7D:55 -D:67
8D:90 -D:136
9E:21 -E:95
10E:148 -E:204
11F:22 -F:91
12F:137 -F:197
13G:55 -G:67
14G:90 -G:136
15H:21 -H:95
16H:148 -H:204
17I:22 -I:91
18I:137 -I:197
19J:55 -J:67
20J:90 -J:136
21K:21 -K:95
22K:148 -K:204
23L:22 -L:91
24L:137 -L:197

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Phe B:154 -Pro B:155
2Glu B:156 -Pro B:157
3Tyr C:143 -Pro C:144
4Phe E:154 -Pro E:155
5Glu E:156 -Pro E:157
6Tyr F:143 -Pro F:144
7Phe H:154 -Pro H:155
8Glu H:156 -Pro H:157
9Tyr I:143 -Pro I:144
10Phe K:154 -Pro K:155
11Glu K:156 -Pro K:157
12Tyr L:143 -Pro L:144

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F15)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F15)

(-) Exons   (0, 0)

(no "Exon" information available for 4F15)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhhhh.................................hhhhhhhhh.....eeeee..hhhhhh............ee....ee....eee..........eeeeee.....eeeeeeeeee..hhhhhhhhh.................................eeeeeeeee....eeeeee...eeee.eeeee.........hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4f15 A  43 KLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGVNSVIEKMNTQF 393
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262 ||    389    
                                                                                                                                                                                                                                                       264|           
                                                                                                                                                                                                                                                        382           


Chain B from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee.....eeeeee..........eeeeee......eeeeee......ee.........eeee.....eeeeee........eeeeeee.........eeeee........eeeee........eeeeeeeeee.....eee.hhhhhh.eee...ee......eee.eeeee..........eeeee.hhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f15 B   2 VKLQESGAVVQPGGSLRLSCAASGFTGSDYDMSWIRQAPGKGLEWVSGILGGSERSYYRDSVKGRSTISRDNSRKTLYLEMNSLRAEDTAVYYCARHSWGGWGQGTTVTVSSASTKGPSVFPLAPSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSSVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKSC 220
                                    11        21        31        41        51        61        71        81        91       101|      119       129    || 142       152       162       172       182       192       202       212        
                                                                                                                             101|                     134|                                                                                  
                                                                                                                              110                      138                                                                                  


Chain C from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains d4f15c1 C:1-110 automated matches                                                                         d4f15c2 C:111-213 automated matches                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee............eeeeeee......................ee...ee.......eeeeee..eeeeee.......................................eeee.............eeee.......eeeee........................eeee...........eeeee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f15 C   1 IQMTQSPASLAVSPGQRATITCRASESVSNFINWFQQKPGQPPKLLIYTASNKGTGVPARFSGSGSGTDFTLTINPVEAEDTANYFCQQTKEVPYGTFGGTKLEIKRADAAPTVSIFPPSSEQLTSGASVVCFLNNFYPKINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLYERHNSYTCEATHKTSTSPIVKSFN 213
                                    10        20        34        44        54        64        74        84        94       104       114       124     ||135       145|      156       166       176       190       200       210   
                                                       29|                                                                                             130|          145|                                  184|                        
                                                        34                                                                                              132           147                                   189                        


Chain D from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhhhh.............................eee.hhhhhhhhh.....eeeee..hhhhhh............ee....ee....eee..........eeeee......eeeeeeeeee..hhhhhhh........ee.........................eeeeeeeee.....eeeee...eeee.eeeee........hhhhh......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4f15 D  43 KLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGNSVIEKMNTQVDDGFLDIWTYNAE 427
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262 ||    390 ||    421      
                                                                                                                                                                                                                                                       264|      392|             
                                                                                                                                                                                                                                                        383       414             


Chain E from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee.....ee..ee..........eeeeee.........eee......eee........eeee.....eeeeee...hhhhheeeeeee..........eeee........eeeee.......eeeeeeeeeee.....eee.hhhhh..eeeeeeee......eeeeeeeeee.........eeeee......eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f15 E   2 VKLQESGAVVQPGGSLRLSCAASGFTGSDYDMSWIRQAPGKGLEWVSGILGGSERSYYRDSVKGRSTISRDNSRKTLYLEMNSLRAEDTAVYYCARHSWGGWGQGTTVTVSSASTKGPSVFPLAPSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSSVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKSC 220
                                    11        21        31        41        51        61        71        81        91       101|      119       129    || 142       152       162       172       182       192       202       212        
                                                                                                                             101|                     134|                                                                                  
                                                                                                                              110                      138                                                                                  


Chain F from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains d4f15f1 F:1-110 automated matches                                                                         d4f15f2 F:111-213 automated matches                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee............eeeeeee......................ee...ee.......eeeeee..eeeeee...hhhhhh..............................eeee...........eeeeee.......eeeee.............ee.........eeeeee.........eeeee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f15 F   1 IQMTQSPASLAVSPGQRATITCRASESVSNFINWFQQKPGQPPKLLIYTASNKGTGVPARFSGSGSGTDFTLTINPVEAEDTANYFCQQTKEVPYGTFGGTKLEIKRADAAPTVSIFPPSSEQLTSGASVVCFLNNFYPKINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLYERHNSYTCEATHKTSTSPIVKSFN 213
                                    10        20        34        44        54        64        74        84        94       104       114       124     ||135       145|      156       166       176       190       200       210   
                                                       29|                                                                                             130|          145|                                  184|                        
                                                        34                                                                                              132           147                                   189                        


Chain G from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh.....................hhhhh.......eehhhhhhhhh....eeeeee................................eee..............ee......eeeeeeeee..hhhhhhhhhh.....ee........ee...............eeeeeeeee....ee.......eeee.eeeeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f15 G  43 KLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGKMNTQ 392
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262 ||    
                                                                                                                                                                                                                                                       264|    
                                                                                                                                                                                                                                                        388    


Chain H from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..ee.....eeeeee.........eeeeeee.......eeeee......eee.......eeeee......eeeee...hhhhheeeeeeee.........eeee........ee..........eeeeeeeeeee....eeee........eeeeeeee......eeeeeeeeee.hhh.....eeeeee...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f15 H   2 VKLQESGAVVQPGGSLRLSCAASGFTGSDYDMSWIRQAPGKGLEWVSGILGGSERSYYRDSVKGRSTISRDNSRKTLYLEMNSLRAEDTAVYYCARHSWGGWGQGTTVTVSSASTKGPSVFPLAPSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSSVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKSC 220
                                    11        21        31        41        51        61        71        81        91       101|      119       129    || 142       152       162       172       182       192       202       212        
                                                                                                                             101|                     134|                                                                                  
                                                                                                                              110                      138                                                                                  


Chain I from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains d4f15i1 I:1-110 automated matches                                                                         d4f15i2 I:111-213 automated matches                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeee.......................ee...ee.......eeeeee..eeeeee........................................eee..........eeeeeee.......eeeee.............ee.........eeeeeee........eeeee......ee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f15 I   1 IQMTQSPASLAVSPGQRATITCRASESVSNFINWFQQKPGQPPKLLIYTASNKGTGVPARFSGSGSGTDFTLTINPVEAEDTANYFCQQTKEVPYGTFGGTKLEIKRADAAPTVSIFPPSSEQLTSGASVVCFLNNFYPKINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLYERHNSYTCEATHKTSTSPIVKSFN 213
                                    10        20        34        44        54        64        74        84        94       104       114       124     ||135       145|      156       166       176       190       200       210   
                                                       29|                                                                                             130|          145|                                  184|                        
                                                        34                                                                                              132           147                                   189                        


Chain J from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee...hhhhhhhh................ee...............hhhhhhhhh.....eeeee................................eee..........ee..ee.....eeeeeeeee...hhhhhhhhhh.....ee........ee................eeeeeeee....ee..ee...eeee.eeeee........hhhhhhh......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f15 J  43 KLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGNKVNSVIEKMNTQFLDIWTYNAELLVLLENERT 437
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262 ||    387    || 422       432     
                                                                                                                                                                                                                                                       264|         392|                   
                                                                                                                                                                                                                                                        380          418                   


Chain K from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..ee....eeeeeeee.........eeeeee.......eeeee......eee.......eeeeee....eeeeeee..hhhhheeeeeee.........eeeee........eeeee.......eee.eeeeeee.....eeee...hhh.eeeeeeee......eeeeeeeeee.hhh.....eeeeeehhhheeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f15 K   2 VKLQESGAVVQPGGSLRLSCAASGFTGSDYDMSWIRQAPGKGLEWVSGILGGSERSYYRDSVKGRSTISRDNSRKTLYLEMNSLRAEDTAVYYCARHSWGGWGQGTTVTVSSASTKGPSVFPLAPSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSSVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKSC 220
                                    11        21        31        41        51        61        71        81        91       101|      119       129    || 142       152       162       172       182       192       202       212        
                                                                                                                             101|                     134|                                                                                  
                                                                                                                              110                      138                                                                                  


Chain L from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains d4f15l1 L:1-110 automated matches                                                                         d4f15l2 L:111-213 automated matches                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee............eeeeeee......................ee...ee.........eee...eeeeee........................................eee...........eeeeee.......eeeee.............ee.........eeeeee.........eeeee.....eeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f15 L   1 IQMTQSPASLAVSPGQRATITCRASESVSNFINWFQQKPGQPPKLLIYTASNKGTGVPARFSGSGSGTDFTLTINPVEAEDTANYFCQQTKEVPYGTFGGTKLEIKRADAAPTVSIFPPSSEQLTSGASVVCFLNNFYPKINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLYERHNSYTCEATHKTSTSPIVKSFN 213
                                    10        20        34        44        54        64        74        84        94       104       114       124     ||135       145|      156       166       176       190       200       210   
                                                       29|                                                                                             130|          145|                                  184|                        
                                                        34                                                                                              132           147                                   189
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F15)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F15)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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Asymmetric Unit
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  Sites
(no "Sites" information available for 4f15)
 
  Cis Peptide Bonds
    Glu B:156 - Pro B:157   [ RasMol ]  
    Glu E:156 - Pro E:157   [ RasMol ]  
    Glu H:156 - Pro H:157   [ RasMol ]  
    Glu K:156 - Pro K:157   [ RasMol ]  
    Phe B:154 - Pro B:155   [ RasMol ]  
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    Phe H:154 - Pro H:155   [ RasMol ]  
    Phe K:154 - Pro K:155   [ RasMol ]  
    Tyr C:143 - Pro C:144   [ RasMol ]  
    Tyr F:143 - Pro F:144   [ RasMol ]  
    Tyr I:143 - Pro I:144   [ RasMol ]  
    Tyr L:143 - Pro L:144   [ RasMol ]  
 
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  4f15
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    Protein Cavities: castP
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    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  C5MQE6_9INFA | C5MQE6
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C5MQE6_9INFA | C5MQE6: 4eda 4lvh

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4F15)