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(-) Description

Title :  CRYSTAL STRUCTURE OF BACILLUS SUBTILIS BETA-KETOACYL-ACP SYNTHASE II (FABF) IN A COVALENT COMPLEX WITH CERULENIN
 
Authors :  F. Trajtenberg, N. Larrieux, A. Buschiazzo
Date :  22 Jul 13  (Deposition) - 02 Apr 14  (Release) - 04 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kasii, Ketoacyl Synthase, Condensing Enzyme, Fatty Acid Elongation, Cerulenin, Drug Target, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Trajtenberg, S. Altabe, N. Larrieux, F. Ficarra, D. De Mendoza, A. Buschiazzo, G. E. Schujman
Structural Insights Into Bacterial Resistance To Cerulenin.
Febs J. V. 281 2324 2014
PubMed-ID: 24641521  |  Reference-DOI: 10.1111/FEBS.12785

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2
    Chains: A, B
    EC Number: 2.3.1.179
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE32L
    Expression System Strain: M15
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FABF, YJAY, BSU11340
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS
    Organism Taxid: 224308
    Strain: 168
    Synonym: 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE II, BETA-KETOACYL- ACP SYNTHASE II, KAS II

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
11XG2Ligand/Ion(3R,7E,10E)-3-HYDROXY-4-OXODODECA-7,10-DIENAMIDE
2CL1Ligand/IonCHLORIDE ION
3EDO3Ligand/Ion1,2-ETHANEDIOL
4NA3Ligand/IonSODIUM ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:109 , ALA A:163 , CYS A:164 , PHE A:203 , HIS A:303 , HIS A:340 , LEU A:397 , GLY A:398 , PHE A:399BINDING SITE FOR RESIDUE 1XG A 501
2AC2SOFTWAREARG A:40 , ALA A:193 , PRO A:194 , LEU A:195 , GLU A:233 , HOH A:611BINDING SITE FOR RESIDUE NA A 502
3AC3SOFTWAREASP A:72 , THR A:75 , MET A:137 , HOH A:630BINDING SITE FOR RESIDUE CL A 503
4AC4SOFTWAREGLU A:45 , THR A:94 , ASP A:95 , GLU A:96BINDING SITE FOR RESIDUE EDO A 504
5AC5SOFTWARETYR A:260 , GLY A:261 , SER A:262 , HOH A:716 , HOH A:803 , VAL B:156 , ARG B:180 , ASP B:182BINDING SITE FOR RESIDUE EDO A 505
6AC6SOFTWAREGLY A:12 , ALA A:13 , ASP A:20 , VAL A:21 , MET A:84 , HOH A:656BINDING SITE FOR RESIDUE NA A 506
7AC7SOFTWAREVAL A:156 , ARG A:180 , ASP A:182 , HOH A:741 , TYR B:260 , SER B:262BINDING SITE FOR RESIDUE EDO A 507
8AC8SOFTWAREILE B:109 , ALA B:163 , CYS B:164 , PHE B:203 , HIS B:303 , HIS B:340 , LEU B:397 , GLY B:398 , PHE B:399BINDING SITE FOR RESIDUE 1XG B 501
9AC9SOFTWAREILE A:139 , ASP A:141 , GLY B:108 , VAL B:161 , ALA B:163BINDING SITE FOR RESIDUE NA B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LS8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LS8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LS8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LS8)

(-) Exons   (0, 0)

(no "Exon" information available for 4LS8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:416
                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeee.....hhhhhhhhhhh....eee............eee.....hhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh......hhh.eeeeeee...hhhhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh....ee...hhhhhhhhhhhhhhhhhhh....eeeeeeee...hhhhhhhhhhh...........................eeeeeeeeehhhhhhh.....eeeeeeeeee........hhhhhhhhhhhhhhhhhhh.hhhhh.eee.....hhhhhhhhhhhhhhhhhhhh...eee.hhhhhh.hhhhhhhhhhhhhhhhhhhhee......................ee....eeeeeeee...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ls8 A  -2 GIQMTKKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKVAAELKDFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADLNITDEIAPRVGVWVGSGIGGLETLESQFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVTACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSFAGFSANKALSTNPDPKTASRPFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGEGGARAMQEAIKDAGIAPEEIDYINAHGTSTYYNDKYETMAIKTVFGEHAHKLAVSSTKSMTGHLLGAAGGIEAIFSILAIKEGVIPPTINIQTPDEECDLDYVPDEARRQELNYVLSNSLGFGGHNATLIFKKYQS 413
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407      


Chain B from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeee.....hhhhhhhhhhh....eee............eee.....hhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh......hhh.eeeeee....hhhhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh....ee...hhhhhhhhhhhhhhhhhhh....eeeeeeee...hhhhhhhhhhh...........................eeeeeeeeehhhhhhh.....eeeeeeeeee........hhhhhhhhhhhhhhhhhhh.hhhhh.eee.....hhhhhhhhhhhhhhhhhhhh...eee.hhhhhh.hhhhhhhhhhhhhhhhhhhhee......................ee....eeeeeeee...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ls8 B  -1 IQMTKKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKVAAELKDFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADLNITDEIAPRVGVWVGSGIGGLETLESQFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVTACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSFAGFSANKALSTNPDPKTASRPFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGEGGARAMQEAIKDAGIAPEEIDYINAHGTSTYYNDKYETMAIKTVFGEHAHKLAVSSTKSMTGHLLGAAGGIEAIFSILAIKEGVIPPTINIQTPDEECDLDYVPDEARRQELNYVLSNSLGFGGHNATLIFKKYQS 413
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LS8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LS8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LS8)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  2.3.1.179
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FABF_BACSU | O34340: 4ls5 4ls6 4ls7

(-) Related Entries Specified in the PDB File

4ls5 4ls6 4ls7