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(-) Description

Title :  CRYSTAL STRUCTURE OF BACILLUS SUBTILIS BETA-KETOACYL-ACP SYNTHASE II (FABF) IN A NON-COVALENT COMPLEX WITH CERULENIN
 
Authors :  F. Trajtenberg, N. Larrieux, A. Buschiazzo
Date :  22 Jul 13  (Deposition) - 02 Apr 14  (Release) - 04 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kasii, Condensing Enzyme, Fatty Acid Elongation, Drug Target, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Trajtenberg, S. Altabe, N. Larrieux, F. Ficarra, D. De Mendoza, A. Buschiazzo, G. E. Schujman
Structural Insights Into Bacterial Resistance To Cerulenin.
Febs J. V. 281 2324 2014
PubMed-ID: 24641521  |  Reference-DOI: 10.1111/FEBS.12785

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2
    Chains: A, B
    EC Number: 2.3.1.179
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE32L
    Expression System Strain: M15
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FABF, YJAY, BSU11340
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS
    Organism Taxid: 224308
    Strain: 168
    Synonym: 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE II, BETA-KETOACYL- ACP SYNTHASE II, KAS II

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
11X92Ligand/IonCERULENIN
2GOL4Ligand/IonGLYCEROL
3K4Ligand/IonPOTASSIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:300 , ALA A:301 , GLU A:348 , SER A:393 , ASN A:394BINDING SITE FOR RESIDUE K A 501
02AC2SOFTWARELYS A:206 , LEU A:208 , ASP A:226 , HOH A:648 , HOH A:665 , HOH A:740BINDING SITE FOR RESIDUE K A 502
03AC3SOFTWAREVAL A:155 , ARG A:179 , ASP A:181 , HOH A:675 , LYS B:175 , TYR B:259 , GLY B:260 , SER B:261 , ASP B:288BINDING SITE FOR RESIDUE GOL A 503
04AC4SOFTWAREILE A:108 , ALA A:162 , CYS A:163 , PHE A:202 , HIS A:302 , THR A:304 , HIS A:339 , LEU A:341 , LEU A:396 , GLY A:397 , PHE A:398 , HOH A:887BINDING SITE FOR RESIDUE 1X9 A 504
05AC5SOFTWAREASP A:21 , TYR A:253 , HOH A:863 , HOH A:893BINDING SITE FOR RESIDUE GOL A 505
06AC6SOFTWAREASN B:300 , ALA B:301 , GLU B:348 , SER B:393 , ASN B:394BINDING SITE FOR RESIDUE K B 501
07AC7SOFTWAREASP A:55 , LYS B:206 , LEU B:208 , ASP B:226 , HOH B:658BINDING SITE FOR RESIDUE K B 502
08AC8SOFTWAREILE B:108 , ALA B:162 , CYS B:163 , PHE B:202 , HIS B:302 , THR B:304 , HIS B:339 , LEU B:396 , GLY B:397 , PHE B:398BINDING SITE FOR RESIDUE 1X9 B 503
09AC9SOFTWAREASP A:60 , TYR A:61 , THR B:210 , HOH B:806BINDING SITE FOR RESIDUE GOL B 504
10BC1SOFTWAREPRO B:15 , LEU B:16 , SER B:32 , LYS B:54 , HOH B:940BINDING SITE FOR RESIDUE GOL B 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LS7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LS7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LS7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LS7)

(-) Exons   (0, 0)

(no "Exon" information available for 4LS7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:413
                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee.....hhhhhhhhhh.....eee....hhhhh...eee.....hhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh......hhh.eeeeee....hhhhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh....ee...hhhhhhhhhhhhhhhhhhh....eeeeeeee...hhhhhhhhhhh...........................eeeeeeeeehhhhhhh.....eeeeeeeeee........hhhhhhhhhhhhhhhhhhh.hhhhh.eee.....hhhhhhhhhhhhhhhhhhhhhh.eee.hhhhhh.hhhhhhhhhhhhhhhhhhhhee......................ee....eeeeeeee...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ls7 A   0 MTKKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKVAAELKDFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADLNITDEIAPRVGVWVGSGIGGLETLESQFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVTACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSFAGFSANKALSTNPDPKTASRPFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGEGGARAMQEAIKDAGIAPEEIDYINAHGTSTYYNDKYETMAIKTVFGEHAHKLAVSSTKSMTGHLLGAAGGIEAIFSILAIKEGVIPPTINIQTPDEECDLDYVPDEARRQELNYVLSNSLGFGGHNATLIFKKYQS 412
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409   


Chain B from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeeeeee.....hhhhhhhhhhh....eee....hhhhh...eee.....hhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh......hhh.eeeeee....hhhhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh....ee...hhhhhhhhhhhhhhhhhhh....eeeeeeee...hhhhhhhhhhh...........................eeeeeeeeehhhhhhh.....eeeeeeeeee........hhhhhhhhhhhhhhhhhhh.hhhhh.eee.....hhhhhhhhhhhhhhhhhhhhhh.eee.hhhhhh.hhhhhhhhhhhhhhhhhhhhee......................ee....eeeeeeee...eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ls7 B  -2 IQMTKKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKVAAELKDFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADLNITDEIAPRVGVWVGSGIGGLETLESQFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVTACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSFAGFSANKALSTNPDPKTASRPFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGEGGARAMQEAIKDAGIAPEEIDYINAHGTSTYYNDKYETMAIKTVFGEHAHKLAVSSTKSMTGHLLGAAGGIEAIFSILAIKEGVIPPTINIQTPDEECDLDYVPDEARRQELNYVLSNSLGFGGHNATLIFKKYQ 411
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LS7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LS7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LS7)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FABF_BACSU | O34340: 4ls5 4ls6 4ls8

(-) Related Entries Specified in the PDB File

4ls5 4ls6 4ls8