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(-) Description

Title :  CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN L1 FROM METHANOCOCCUS JANNASCHII WITH DELETION OF 8 RESIDUES FROM C-TERMINUS
 
Authors :  A. G. Gabdulkhakov, S. V. Tishchenko, A. A. Shkliaeva, M. B. Garber, S. V A. V. Sarskikh
Date :  17 Jul 13  (Deposition) - 02 Jul 14  (Release) - 02 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Alpha-Beta, Structural Constituent Of Ribosome, Rrna Binding, Regulation Of Translation, Translation, Ribosomal Rna, Mrna, Ribosomal Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. V. Sarskikh, A. G. Gabdulkhakov, O. S. Kostareva, A. A. Shkliaeva, S. V. Tishchenko
Crystal Structure Of A Mutant Of Archaeal Ribosomal Protein L1 From Methanococcus Jannaschii
Crystallography Reports V. 59 394 2014
PubMed: search  |  Reference-DOI: 10.1134/S1063774514030158

(-) Compounds

Molecule 1 - 50S RIBOSOMAL PROTEIN L1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A-PL-MJAL1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET11A-PL
    Expression System Vector Type: PLASMID
    Gene: MJ0510, RPL1, RPLA
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 243232
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2IPA1Ligand/IonISOPROPYL ALCOHOL
3TLA1Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:39 , GLU A:41 , ASN A:42 , LYS A:100 , LYS A:140 , TYR A:189 , GLU A:190 , HOH A:404 , HOH A:419 , HOH A:585 , HOH A:617BINDING SITE FOR RESIDUE TLA A 301
2AC2SOFTWAREPRO A:141 , ARG A:145BINDING SITE FOR RESIDUE IPA A 302
3AC3SOFTWAREVAL A:48 , VAL A:49BINDING SITE FOR RESIDUE CL A 303
4AC4SOFTWAREARG A:126 , LYS A:128BINDING SITE FOR RESIDUE CL A 304
5AC5SOFTWARETHR A:170 , ASP A:171 , GLU A:172 , HOH A:451 , HOH A:536 , HOH A:584BINDING SITE FOR RESIDUE CL A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LQ4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LQ4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LQ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LQ4)

(-) Exons   (0, 0)

(no "Exon" information available for 4LQ4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.......eeeeeeee......hhhhh.eeeee..........eeee.hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhh...eee.....hhhhhhhhh.eeeee.....eeeeeeee...hhhhhhhhhhhhhhhhhhhh.hhhh.eeeeeeee.....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lq4 A   1 MDREALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKV 211
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LQ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LQ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LQ4)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RL1_METJA | P54050: 1cjs 1i2a 1u63

(-) Related Entries Specified in the PDB File

1cjs CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L1 FROM METHANOCOCCUS JANNASCHII
1i2a CRYSTAL STRUCTURE OF L1 RIBOSOMAL PROTEIN FROM METHANOCOCCUS JANNASCHII WITH 1.85A RESOLUTION
1u63 THE STRUCTURE OF A RIBOSOMAL PROTEIN L1-MRNA COMPLEX