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(-) Description

Title :  CRYSTAL STRUCTURE OF A CDC6 PHOSPHOPEPTIDE IN COMPLEX WITH CKS1
 
Authors :  D. A. Mcgrath, E. R. M. Balog, M. Koivomagi, R. Lucena, M. V. Mai, A. Hirsc D. R. Kellogg, M. Loog, S. M. Rubin
Date :  15 Jul 13  (Deposition) - 06 Nov 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Transferase Regulator, Phospho-Protein, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Mcgrath, E. R. Balog, M. Koivomagi, R. Lucena, M. V. Mai, A. Hirschi, D. R. Kellogg, M. Loog, S. M. Rubin
Cks Confers Specificity To Phosphorylation-Dependent Cdk Signaling Pathways.
Nat. Struct. Mol. Biol. V. 20 1407 2013
PubMed-ID: 24186063  |  Reference-DOI: 10.1038/NSMB.2707

(-) Compounds

Molecule 1 - CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT (UNP RESIDUES 1-113)
    Gene: CKS1, YBR1011, YBR135W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: CELL DIVISION CONTROL PROTEIN CKS1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (1x): A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1TPO4Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1TPO2Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (0, 0)

(no "Site" information available for 4LPA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LPA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LPA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LPA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LPA)

(-) Exons   (0, 0)

(no "Exon" information available for 4LPA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains d4lpaa_ A: automated matches                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhee...ee...eeeeeee.hhhhhhhhhhhhh..........hhhhhhhh........eee........eeeeeee................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4lpa A   7 AFQGRKLTDQERARVLEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAPEPHILLFKRPLNYEAELRAAIPItPT 119
                                    16        26        36        46        56        66        76        86        96       106       116|  
                                                                                                                                        117-TPO


Chain B from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains d4lpab_ B: automated matches                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhee...ee...eeeeeee.hhhhhhhhhhhhh..........hhhhhhhh........eee........eeeeeee................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4lpa B   7 AFQGRKLTDQERARVLEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAPEPHILLFKRPLNYEAELRAAIPItPT 119
                                    16        26        36        46        56        66        76        86        96       106       116|  
                                                                                                                                        117-TPO


Chain C from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains d4lpac_ C: automated matches                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhee...ee...eeeeeee.hhhhhhhhhhhhh..........hhhhhhhh........eee........eeeeeee................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4lpa C   7 AFQGRKLTDQERARVLEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAPEPHILLFKRPLNYEAELRAAIPItPT 119
                                    16        26        36        46        56        66        76        86        96       106       116|  
                                                                                                                                        117-TPO


Chain D from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains d4lpad_ D: automated matches                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhee...ee...eeeeeee.hhhhhhhhhhhhh..........hhhhhhhh........eee........eeeeeee................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4lpa D   7 AFQGRKLTDQERARVLEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAPEPHILLFKRPLNYEAELRAAIPItPT 119
                                    16        26        36        46        56        66        76        86        96       106       116|  
                                                                                                                                        117-TPO
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LPA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LPA)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)

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  CKS1_YEAST | P20486
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 Related Entries

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        CKS1_YEAST | P20486: 1qb3 3qy2

(-) Related Entries Specified in the PDB File

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