Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF THE CARBOXYL TRANSFERASE DOMAIN FROM RHIZOBIUM ETLI PYRUVATE CARBOXYLASE WITH OXAMATE AND BIOTIN
 
Authors :  A. D. Lietzan, M. St. Maurice
Date :  12 Jul 13  (Deposition) - 10 Sep 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.26
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Tim Barrel, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. D. Lietzan, Y. Lin, M. St. Maurice
The Role Of Biotin And Oxamate In The Carboxyltransferase Reaction Of Pyruvate Carboxylase.
Arch. Biochem. Biophys. V. 562C 70 2014
PubMed-ID: 25157442  |  Reference-DOI: 10.1016/J.ABB.2014.08.008

(-) Compounds

Molecule 1 - PYRUVATE CARBOXYLASE
    Chains: A, B, C, D
    EC Number: 6.4.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CARBOXYL TRANSFERASE DOMAIN, UNP RESIDUES 465-1067
    Gene: PYC, RHE_CH04002
    Organism Scientific: RHIZOBIUM ETLI
    Organism Taxid: 347834
    Strain: CFN 42

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 25)

Asymmetric/Biological Unit (7, 25)
No.NameCountTypeFull Name
1BTN4Ligand/IonBIOTIN
2CL3Ligand/IonCHLORIDE ION
3GOL2Ligand/IonGLYCEROL
4KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
5MG4Ligand/IonMAGNESIUM ION
6OXM4Ligand/IonOXAMIC ACID
7ZN4Ligand/IonZINC ION

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:549 , KCX A:718 , HIS A:747 , HIS A:749 , HOH A:1363BINDING SITE FOR RESIDUE ZN A 1101
02AC2SOFTWAREMET A:534 , ARG A:535 , GLU A:537 , ASP A:768 , HOH A:1275 , HOH A:1358BINDING SITE FOR RESIDUE MG A 1102
03AC3SOFTWARETYR A:987 , PRO A:988 , LYS A:989 , VAL A:990BINDING SITE FOR RESIDUE CL A 1103
04AC4SOFTWAREASP A:482 , GLY A:487 , HIS A:488 , PRO A:489 , PHE A:595 , THR A:597 , TYR A:1001 , TYR A:1012 , ARG A:1066BINDING SITE FOR RESIDUE BTN A 1104
05AC5SOFTWAREARG A:548 , GLN A:552 , GLY A:586 , ALA A:587 , LEU A:619 , ARG A:621 , PHE A:654 , KCX A:718 , THR A:882 , HOH A:1363BINDING SITE FOR RESIDUE OXM A 1105
06AC6SOFTWAREASP A:750 , GLY A:779 , ASN A:780 , HOH A:1377 , ASP B:750 , GLY B:779 , ASN B:780 , HOH B:1282BINDING SITE FOR RESIDUE GOL B 1101
07AC7SOFTWAREASP B:549 , KCX B:718 , HIS B:747 , HIS B:749 , HOH B:1284BINDING SITE FOR RESIDUE ZN B 1102
08AC8SOFTWAREMET B:534 , ARG B:535 , GLU B:537 , ASP B:768 , HOH B:1240 , HOH B:1264BINDING SITE FOR RESIDUE MG B 1103
09AC9SOFTWARETYR B:479 , ASP B:482 , PRO B:489 , THR B:597 , TYR B:1012 , ARG B:1066BINDING SITE FOR RESIDUE BTN B 1104
10BC1SOFTWAREARG B:548 , GLN B:552 , GLY B:586 , ALA B:587 , LEU B:619 , ARG B:621 , PHE B:654 , KCX B:718 , THR B:882 , HOH B:1284BINDING SITE FOR RESIDUE OXM B 1105
11BC2SOFTWAREASP C:549 , KCX C:718 , HIS C:747 , HIS C:749 , HOH C:1267BINDING SITE FOR RESIDUE ZN C 1101
12BC3SOFTWAREMET C:534 , ARG C:535 , GLU C:537 , ASP C:768 , HOH C:1251 , HOH C:1261BINDING SITE FOR RESIDUE MG C 1102
13BC4SOFTWAREASP C:750 , GLY C:753 , ASN C:780 , HOH C:1264 , HOH C:1266 , ASP D:750 , GLY D:779 , ASN D:780BINDING SITE FOR RESIDUE GOL C 1103
14BC5SOFTWARETYR C:987 , PRO C:988 , LYS C:989 , VAL C:990BINDING SITE FOR RESIDUE CL C 1104
15BC6SOFTWAREASP C:482 , GLY C:487 , PRO C:489 , THR C:597 , ARG C:1066 , HOH C:1279BINDING SITE FOR RESIDUE BTN C 1105
16BC7SOFTWAREARG C:548 , GLN C:552 , GLY C:586 , ALA C:587 , LEU C:619 , ARG C:621 , KCX C:718 , THR C:882 , HOH C:1267BINDING SITE FOR RESIDUE OXM C 1106
17BC8SOFTWAREASP D:549 , KCX D:718 , HIS D:747 , HIS D:749 , HOH D:1319BINDING SITE FOR RESIDUE ZN D 1101
18BC9SOFTWAREMET D:534 , ARG D:535 , GLU D:537 , ASP D:768 , HOH D:1290 , HOH D:1315BINDING SITE FOR RESIDUE MG D 1102
19CC1SOFTWARETYR D:987 , PRO D:988 , LYS D:989 , VAL D:990BINDING SITE FOR RESIDUE CL D 1103
20CC2SOFTWAREASP D:482 , GLY D:487 , HIS D:488 , PRO D:489 , ARG D:594 , THR D:597 , TYR D:1001 , ARG D:1066BINDING SITE FOR RESIDUE BTN D 1104
21CC3SOFTWAREARG D:548 , GLN D:552 , GLY D:586 , ALA D:587 , LEU D:619 , ARG D:621 , PHE D:654 , KCX D:718 , THR D:882 , HOH D:1319BINDING SITE FOR RESIDUE OXM D 1105

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LOC)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Thr A:882 -Pro A:883
2Thr B:882 -Pro B:883
3Thr C:882 -Pro C:883
4Thr D:882 -Pro D:883

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LOC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LOC)

(-) Exons   (0, 0)

(no "Exon" information available for 4LOC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:595
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.............................hhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhh....hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhh...hhhhhhhhhhhhh...eeeeeehhhhh......hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh..eeeeeee.........hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhh.......hhhhhhhhhh.........hhhhhhhhhh.......hhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee...eeeeeeeee.......eeeeeeee..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4loc A  471 DRATKLLTYLADVTVNGHPEAKDRPKPLENAARPVVPYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVkDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKTLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRA 1067
                                   480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1032      1042      1052      1062     
                                                                                                                                                                                                                                                                                 718-KCX                                                                                                                                                                                                                                                                                                             1027|                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      1030                                     


Chain B from PDB  Type:PROTEIN  Length:593
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...........................hhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhh....hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhh...hhhhhhhhhhhhh...eeeeeehhhhh......hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh..eeeeeee.........hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh........hhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhh........hhhhhhhhhh.........hhhhhhhhhh.......hhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee.....eeeeeeee.......eeeeeeee..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4loc B  471 DRATKLLTYLADVTVNGHPEAKDRPKPLENRPVVPYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVkDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKTLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRA 1067
                                   480       490       500|      512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712     | 722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022     |1034      1044      1054      1064   
                                                       500|                                                                                                                                                                                                                    718-KCX                                                                                                                                                                                                                                                                                                              1028|                                    
                                                        503                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          1031                                    


Chain C from PDB  Type:PROTEIN  Length:595
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...........................hhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhh....hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhh.hhhhhhhhhhhhh...eeeeeehhhhh......hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh..eeeeeee.........hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhh........hhhhhhhhhh.........hhhhhhhhhh.......hhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.....eeeeeeeee.......eeeeeeee..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4loc C  471 DRATKLLTYLADVTVNGHPEAKDRPKPLENAARPVVPYGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVkDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRA 1067
                                   480       490       500       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712     | 722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022      1032      1042      1052      1062     
                                                               508|                                                                                                                                                                                                            718-KCX                                                                                                                                                                                                                                                                                                                                                         
                                                                511                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:596
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.............................hhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhh...hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhh.hhhhhhhhhhhhh...eeeeeehhhhh......hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh..eeeeeee.........hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh........hhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhh......hhhhhhhhhh.........hhhhhhhhhh.......hhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.....eeeeeeeee.......eeeeeeee..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4loc D  471 DRATKLLTYLADVTVNGHPEAKDRPKPLENAARPVVPYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVkDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRA 1067
                                   480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      
                                                                                                                                                                                                                                                                                 718-KCX                                                                                                                                                                                       908|                                                                                                                                                             
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                910
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LOC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LOC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LOC)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BTN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    KCX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    OXM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Thr A:882 - Pro A:883   [ RasMol ]  
    Thr B:882 - Pro B:883   [ RasMol ]  
    Thr C:882 - Pro C:883   [ RasMol ]  
    Thr D:882 - Pro D:883   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4loc
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q2K340_RHIEC | Q2K340
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  6.4.1.1
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q2K340_RHIEC | Q2K340
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2K340_RHIEC | Q2K340: 2qf7 3tw6 3tw7 4jx4 4jx5 4jx6 4m6v 4mfd 4mfe 4mim

(-) Related Entries Specified in the PDB File

2qf7 CRYSTAL STRUCTURE OF A COMPLETE MULTIFUNCTIONAL PYRUVATE CARBOXYLASE FROM RHIZOBIUM ETLI
3tw6 STRUCTURE OF RHIZOBIUM ETLI PYRUVATE CARBOXYLASE T882A WITH THE ALLOSTERIC ACTIVATOR, ACETYL COENZYME-A
4jx4 STRUCTURE OF THE CARBOXYL TRANSFERASE DOMAIN FROM RHIZOBIUM ETLI PYRUVATE CARBOXYLASE
4jx5 STRUCTURE OF THE CARBOXYL TRANSFERASE DOMAIN FROM RHIZOBIUM ETLI PYRUVATE CARBOXYLASE WITH PYRUVATE
4jx6 STRUCTURE OF THE CARBOXYL TRANSFERASE DOMAIN FROM RHIZOBIUM ETLI PYRUVATE CARBOXYLASE WITH PYRUVATE AND BIOCYTIN
4m6v STRUCTURE OF THE CARBOXYL TRANSFERASE DOMAIN FROM RHIZOBIUM ETLI PYRUVATE CARBOXYLASE WITH PYRUVATE AND BIOCYTIN
4mfd STRUCTURE OF THE CARBOXYL TRANSFERASE DOMAIN FROM RHIZOBIUM ETLI PYRUVATE CARBOXYLASE WITH OXALATE
4mfe STRUCTURE OF THE CARBOXYL TRANSFERASE DOMAIN FROM RHIZOBIUM ETLI PYRUVATE CARBOXYLASE WITH 3-HYDROXYPYRUVATE
4mim STRUCTURE OF THE CARBOXYL TRANSFERASE DOMAIN FROM RHIZOBIUM ETLI PYRUVATE CARBOXYLASE WITH 3-BROMOPYRUVATE