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(-) Description

Title :  CRYSTAL STRUCTURE OF A COMPLETE MULTIFUNCTIONAL PYRUVATE CARBOXYLASE FROM RHIZOBIUM ETLI
 
Authors :  M. St Maurice, K. H. Surinya, I. Rayment
Date :  27 Jun 07  (Deposition) - 04 Sep 07  (Release) - 15 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Multi-Domain, Multi-Functional, Biotin-Dependent, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. St Maurice, L. Reinhardt, K. H. Surinya, P. V. Attwood, J. C. Wallace, W. W. Cleland, I. Rayment
Domain Architecture Of Pyruvate Carboxylase, A Biotin-Dependent Multifunctional Enzyme
Science V. 317 1076 2007
PubMed-ID: 17717183  |  Reference-DOI: 10.1126/SCIENCE.1144504

(-) Compounds

Molecule 1 - PYRUVATE CARBOXYLASE PROTEIN
    Chains: A, B
    EC Number: 6.4.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET17B
    Expression System Strain: ROSETTA(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PYC
    Organism Scientific: RHIZOBIUM ETLI
    Organism Taxid: 347834
    Strain: CFN 42

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 20)

Asymmetric Unit (8, 20)
No.NameCountTypeFull Name
1AGS2Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2CL4Ligand/IonCHLORIDE ION
3COA1Ligand/IonCOENZYME A
4FMT2Ligand/IonFORMIC ACID
5GOL1Ligand/IonGLYCEROL
6KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
7MG6Ligand/IonMAGNESIUM ION
8ZN2Ligand/IonZINC ION
Biological Unit 1 (5, 16)
No.NameCountTypeFull Name
1AGS4Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2CL-1Ligand/IonCHLORIDE ION
3COA2Ligand/IonCOENZYME A
4FMT4Ligand/IonFORMIC ACID
5GOL2Ligand/IonGLYCEROL
6KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
7MG-1Ligand/IonMAGNESIUM ION
8ZN-1Ligand/IonZINC ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP B:549 , KCX B:718 , HIS B:747 , HIS B:749 , HOH B:1335BINDING SITE FOR RESIDUE ZN B 1155
02AC2SOFTWAREGLU B:283 , GLU B:297 , AGS B:1161BINDING SITE FOR RESIDUE MG B 1156
03AC3SOFTWAREGLU B:297 , AGS B:1161 , HOH B:1673BINDING SITE FOR RESIDUE MG B 1157
04AC4SOFTWAREMET B:534 , ARG B:535 , GLU B:537 , ASP B:768 , HOH B:1359 , HOH B:1430BINDING SITE FOR RESIDUE MG B 1158
05AC5SOFTWAREGLU A:283 , GLU A:297 , AGS A:1162BINDING SITE FOR RESIDUE MG A 1155
06AC6SOFTWAREGLU A:297 , ASN A:299 , AGS A:1162BINDING SITE FOR RESIDUE MG A 1156
07AC7SOFTWAREASP A:549 , KCX A:718 , HIS A:747 , HIS A:749 , HOH A:1476BINDING SITE FOR RESIDUE ZN A 1157
08AC8SOFTWAREMET A:534 , ARG A:535 , GLU A:537 , ASP A:768 , HOH A:1203 , HOH A:1375BINDING SITE FOR RESIDUE MG A 1158
09AC9SOFTWARETYR B:987 , PRO B:988 , LYS B:989 , VAL B:990 , HOH B:1270BINDING SITE FOR RESIDUE CL B 1159
10BC1SOFTWARETYR A:987 , PRO A:988 , LYS A:989 , VAL A:990BINDING SITE FOR RESIDUE CL A 1159
11BC2SOFTWAREILE B:65 , GLU B:66BINDING SITE FOR RESIDUE CL B 1160
12BC3SOFTWAREGLY A:63 , PRO A:64 , ILE A:65 , GLU A:66BINDING SITE FOR RESIDUE CL A 1160
13BC4SOFTWAREARG A:427 , ARG A:469 , GLN A:470 , ASP A:471 , ARG A:472 , ALA A:473 , ILE A:1026 , LYS A:1030 , THR A:1031 , LEU A:1032 , LEU A:1054 , ASN A:1055 , HOH A:1764 , PHE B:44 , HOH B:1624BINDING SITE FOR RESIDUE COA A 1161
14BC5SOFTWARELYS B:166 , MET B:176 , GLU B:208 , LYS B:209 , VAL B:211 , HIS B:216 , GLN B:240 , ASN B:243 , LYS B:245 , GLU B:283 , LEU B:285 , ILE B:296 , GLU B:297 , ASN B:299 , THR B:454 , MG B:1156 , MG B:1157 , HOH B:1638 , HOH B:1775BINDING SITE FOR RESIDUE AGS B 1161
15BC6SOFTWAREHIS A:216 , GLN A:240 , ASN A:243 , LYS A:245 , GLU A:283 , LEU A:285 , ILE A:296 , GLU A:297 , ASN A:299 , THR A:454 , MG A:1155 , MG A:1156 , HOH A:1709 , HOH A:1760 , HOH A:1774BINDING SITE FOR RESIDUE AGS A 1162
16BC7SOFTWAREHOH A:1778 , LEU B:25 , HIS B:323 , PRO B:333 , GLY B:336 , HOH B:1317 , HOH B:1406 , HOH B:1408 , HOH B:1747BINDING SITE FOR RESIDUE GOL B 1162
17BC8SOFTWAREALA A:376 , SER A:377 , ARG B:20 , LEU B:383 , GLY B:385 , GLY B:386 , HOH B:1263BINDING SITE FOR RESIDUE FMT B 1163
18BC9SOFTWAREARG A:20 , LEU A:383 , GLY A:385 , GLY A:386 , SER B:375 , ALA B:376 , SER B:377 , HOH B:1276BINDING SITE FOR RESIDUE FMT A 1163

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QF7)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Leu A:210 -Val A:211
2Ala A:250 -Pro A:251
3Asn A:500 -Ala A:501
4Gly A:511 -Asn A:512
5Thr A:882 -Pro A:883
6Arg A:1077 -Lys A:1078
7Thr A:1122 -Ala A:1123
8Val A:1137 -Lys A:1138
9Ala B:250 -Pro B:251
10Thr B:882 -Pro B:883

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QF7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QF7)

(-) Exons   (0, 0)

(no "Exon" information available for 2QF7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1076
 aligned with Q2K340_RHIEC | Q2K340 from UniProtKB/TrEMBL  Length:1154

    Alignment length:1152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150  
        Q2K340_RHIEC      1 MPISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFIDTTPELFQQVKRQDRATKLLTYLADVTVNGHPEAKDRPKPLENAARPVVPYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVY 1152
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qf7A01 A:1-139  [code=3.40.50.20, no name defined]                                                                                                                                                             2qf7A02 A:209-468 ATP-grasp fold, B domain                                                                                                                                                                                                                          2qf7A03            ---------------------- ------2qf7A04 A:517-826 Aldolase class I                                                                                                                                                                                                                                                                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2qf7A03 A:469-487,A:1004-1074 pyruvate carboxylase f1077a mutant domain2qf7A07 A:1075-1152  [code=2.40.   50.100,    no name defined]                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------                                                                     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Biotin_lipoyl-2qf7A01    A:1085-1   152                              Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhhh..eeeeeehhhhh.hhhhhh...eee.............hhhhhhhhhhhhhhhhhh..eee........hhhhhhhhhhh..ee...hhhhhhhhhhhhhhhhhhhhh.....---------------------------------------------------------------------.....eeeeeeeeee.....eeeeeeeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeee.....hhhhhhhhhh.hhhhhhhhhhh.....hhhhh..hhhhh....eeeeeeee............ee..eee......eeee........ee......eeeeeeeee.hhhhhhhhhhhhhhhheee....hhhhhhhhhhhhhhhh..........hhhhhh.....hhhhhhhhhhhhhhhhh......................-......hhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhh...hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhh.hhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeeeee.........hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh........hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhh.......hhhhhhhhhh.........hhhhhhhhhh.......hhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee..eeeeeeeeee.......eeeeeeee..eeeeeeee.hhhh................eee....eeeeee........---.eeeeee.---.eeee........ee......ee....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                2qf7 A    1 GPISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVV---------------------------------------------------------------------KLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFIDTTPELFQQVKRQDRATKLLTYLADVTVNGHPEAKDRPKPLENAARPVVPYA-GNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVkDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAV---DVLVSIEA---ETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVY 1152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        |-         -         -         -         -         -         -       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500        |-|      520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100     |1110      |  -|     1130      1140      1150  
                                                                                                                                                                    139                                                                   209                                                                                                                                                                                                                                                                                                         509 |                                                                                                                                                                                                            718-KCX                                                                                                                                                                                                                                                                                                                                                                                            1106   |   1117   |                               
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        511                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1110       1121                               


Chain B from PDB  Type:PROTEIN  Length:1017
 aligned with Q2K340_RHIEC | Q2K340 from UniProtKB/TrEMBL  Length:1154

    Alignment length:1068
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060        
        Q2K340_RHIEC      1 MPISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFIDTTPELFQQVKRQDRATKLLTYLADVTVNGHPEAKDRPKPLENAARPVVPYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRAH 1068
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qf7B01 B:1-139  [code=3.40.50.20, no name defined]                                                                                        -------               -------       -----                        ------2qf7B03 B:211-467 ATP-grasp fold, B domain                                                                                                                                                                                                                        2qf7B04            ------------ --------  ------2qf7B05 B:517-826 Aldolase class I                                                                                                                                                                                                                                                                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2qf7B04 B:469-487,B:1004-1068                                     CATH domains
           Pfam domains (1) -CPSase_L_chain-2qf7B07 B:2-118                                                                                       ----CPSase_L_D2-2qf7B01 B:12               3-332                                                                                                                                                                      ------------------Biotin_carb_C-2qf7B05 B:351-458                                                                             --------- ------------------------------- --------  -------------------------------------HMGL-like-2qf7B03 B:548-797                                                                                                                                                                                                                               -------------------------------------PYC_OADA-2qf7B09 B:835-1036                                                                                                                                                                               -------------------------------- Pfam domains (1)
           Pfam domains (2) -CPSase_L_chain-2qf7B08 B:2-118                                                                                       ----CPSase_L_D2-2qf7B02 B:12               3-332                                                                                                                                                                      ------------------Biotin_carb_C-2qf7B06 B:351-458                                                                             --------- ------------------------------- --------  -------------------------------------HMGL-like-2qf7B04 B:548-797                                                                                                                                                                                                                               -------------------------------------PYC_OADA-2qf7B10 B:835-1036                                                                                                                                                                               -------------------------------- Pfam domains (2)
         Sec.struct. author ....eeee..hhhhhhhhhhhhhhh..eeeeeehhhhh.hhhhhhh.eeee.......-.....hhhhhhhhhhhhhhhhhh..eee........hhhhhhhhhhhh.ee...hhhhhhhhhh.hhhhhhhhhh............---------------.eeee..-------.eee.------------------------.eeee....eeeeeeeeee.....eeeeeeeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeeeeeee.....eeeeeee.....hhhhhhhhhh.hhhhhhhhhhh.....hhhhh..hhhhh....eeeeeeee..hhhhh.....ee..eee......eeee........ee......eeeeeeeee.hhhhhhhhhhhhhhhheee....hhhhhhhhhhhhhhhh..........hhhhh...-..hhhhhhhhhhhhhhhhh............-........--......hhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhh....hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhh.hhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh..eeeeeee.........hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh........hhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhh.......hhhhhhhhhh.........hhhhhhhhhh.......hhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.....eeeeeeeee.......eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                2qf7 B    1 GPISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHL-RDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLP---------------PVMLKAS-------MRVIR------------------------VYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFIDTTPELFQQV-RQDRATKLLTYLADVTVNGHPEAKDRPKPLE-AARPVVPY--GNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVkDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIVNQAVSATDSQGMVTVFFELNGQPRRIKVPDRAH 1068
                                    10        20        30        40        50       |60        70        80        90       100       110       120       130       140     |   -         - |     | -     | 180         -         -    |  210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460      |470       480       490        |-|      | -|      520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060        
                                                                                    58 |                                                                                   146             162   168     176 180                      205                                                                                                                                                                                                                                                                   467 |                           499 |    508  |                                                                                                                                                                                                            718-KCX                                                                                                                                                                                                                                                                                                                                                          
                                                                                      60                                                                                                                                                                                                                                                                                                                                                                                                                      469                             501       511
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QF7)

(-) CATH Domains  (5, 9)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (6, 11)

Asymmetric Unit
(-)
Clan: ATP-grasp (83)
(-)
Clan: Hybrid (58)
(-)
Clan: TIM_barrel (694)
(-)
Clan: no clan defined [family: Biotin_carb_C] (23)
(-)
Clan: no clan defined [family: CPSase_L_chain] (25)
(-)
Clan: no clan defined [family: PYC_OADA] (4)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q2K340_RHIEC | Q2K340)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0009374    biotin binding    Interacting selectively and non-covalently with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions.
    GO:0004075    biotin carboxylase activity    Catalysis of the reaction: ATP + biotin-carboxyl-carrier protein + CO2 = ADP + phosphate + carboxybiotin-carboxyl-carrier protein.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004736    pyruvate carboxylase activity    Catalysis of the reaction: ATP + bicarbonate + pyruvate = ADP + 2 H(+) + oxaloacetate + phosphate.
biological process
    GO:0006094    gluconeogenesis    The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
    GO:0006090    pyruvate metabolic process    The chemical reactions and pathways involving pyruvate, 2-oxopropanoate.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2K340_RHIEC | Q2K340: 3tw6 3tw7 4jx4 4jx5 4jx6 4loc 4m6v 4mfd 4mfe 4mim

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2QF7)