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(-) Description

Title :  THE CRYSTAL STRUCTURE OF HEMAGGLUTININ FROM A H7N9 INFLUENZA VIRUS (A/SHANGHAI/2/2013) IN COMPLEX WITH LSTB
 
Authors :  H. Yang, P. J. Carney, J. C. Chang, J. M. Villanueva, J. Stevens
Date :  11 Jul 13  (Deposition) - 02 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  C,D  (1x)
Biol. Unit 4:  E,F  (1x)
Biol. Unit 5:  G (1x),H (1x),I (1x),J (1x),K (1x),L (1x)
Biol. Unit 6:  G,H  (1x)
Biol. Unit 7:  I,J  (1x)
Biol. Unit 8:  K,L  (1x)
Keywords :  Receptor Specificity, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yang, P. J. Carney, J. C. Chang, J. M. Villanueva, J. Stevens
Structural Analysis Of The Hemagglutinin From The Recent 2013 H7N9 Influenza Virus.
J. Virol. V. 87 12433 2013
PubMed-ID: 24027325  |  Reference-DOI: 10.1128/JVI.01854-13

(-) Compounds

Molecule 1 - HEMAGGLUTININ
    Chains: A, C, E, G, I, K
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Fragment: HA1 SUBUNIT RESIDUES 19-339
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 1332244
    Strain: A/SHANGHAI/02/2013(H7N9)
 
Molecule 2 - HEMAGGLUTININ
    Chains: B, D, F, H, J, L
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Fragment: HA2 SUBUNIT RESIDUES 340-517
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 1332244
    Strain: A/SHANGHAI/02/2013(H7N9)

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCDEF      
Biological Unit 2 (1x): AB          
Biological Unit 3 (1x):   CD        
Biological Unit 4 (1x):     EF      
Biological Unit 5 (1x):       G (1x)H (1x)I (1x)J (1x)K (1x)L (1x)
Biological Unit 6 (1x):       GH    
Biological Unit 7 (1x):         IJ  
Biological Unit 8 (1x):           KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 62)

Asymmetric Unit (6, 62)
No.NameCountTypeFull Name
1BMA9Ligand/IonBETA-D-MANNOSE
2CA6Ligand/IonCALCIUM ION
3FUC3Ligand/IonALPHA-L-FUCOSE
4GAL8Ligand/IonBETA-D-GALACTOSE
5NAG30Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA6Ligand/IonO-SIALIC ACID
Biological Unit 1 (5, 33)
No.NameCountTypeFull Name
1BMA6Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3FUC3Ligand/IonALPHA-L-FUCOSE
4GAL3Ligand/IonBETA-D-GALACTOSE
5NAG18Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA3Ligand/IonO-SIALIC ACID
Biological Unit 2 (5, 12)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3FUC1Ligand/IonALPHA-L-FUCOSE
4GAL2Ligand/IonBETA-D-GALACTOSE
5NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA1Ligand/IonO-SIALIC ACID
Biological Unit 3 (5, 11)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3FUC1Ligand/IonALPHA-L-FUCOSE
4GAL1Ligand/IonBETA-D-GALACTOSE
5NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA1Ligand/IonO-SIALIC ACID
Biological Unit 4 (4, 10)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3FUC1Ligand/IonALPHA-L-FUCOSE
4GAL-1Ligand/IonBETA-D-GALACTOSE
5NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA1Ligand/IonO-SIALIC ACID
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1BMA-1Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3FUC-1Ligand/IonALPHA-L-FUCOSE
4GAL-1Ligand/IonBETA-D-GALACTOSE
5NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA-1Ligand/IonO-SIALIC ACID
Biological Unit 6 (4, 8)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3FUC-1Ligand/IonALPHA-L-FUCOSE
4GAL2Ligand/IonBETA-D-GALACTOSE
5NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA1Ligand/IonO-SIALIC ACID
Biological Unit 7 (4, 7)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3FUC-1Ligand/IonALPHA-L-FUCOSE
4GAL1Ligand/IonBETA-D-GALACTOSE
5NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA1Ligand/IonO-SIALIC ACID
Biological Unit 8 (4, 8)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3FUC-1Ligand/IonALPHA-L-FUCOSE
4GAL2Ligand/IonBETA-D-GALACTOSE
5NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA1Ligand/IonO-SIALIC ACID

(-) Sites  (62, 62)

Asymmetric Unit (62, 62)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:12 , THR A:14 , ASN A:28 , NAG A:402 , FUC A:404 , ASN K:267BINDING SITE FOR RESIDUE NAG A 401
02AC2SOFTWARENAG A:401 , BMA A:403 , FUC A:404 , HOH A:502 , HOH A:523BINDING SITE FOR RESIDUE NAG A 402
03AC3SOFTWARENAG A:402BINDING SITE FOR RESIDUE BMA A 403
04AC4SOFTWARENAG A:401 , NAG A:402 , HOH A:516 , VAL K:264 , ASP K:265 , ALA K:266BINDING SITE FOR RESIDUE FUC A 404
05AC5SOFTWAREASN A:28 , THR A:30 , THR A:309 , NAG A:406BINDING SITE FOR RESIDUE NAG A 405
06AC6SOFTWARETHR A:30 , NAG A:405 , BMA A:407 , HOH A:526BINDING SITE FOR RESIDUE NAG A 406
07AC7SOFTWARENAG A:406BINDING SITE FOR RESIDUE BMA A 407
08AC8SOFTWARETYR A:88 , ALA A:125 , THR A:126 , SER A:127 , TRP A:142 , LEU A:144 , HIS A:174 , GLU A:181 , LEU A:185 , NAG A:409 , HOH A:521BINDING SITE FOR RESIDUE SIA A 408
09AC9SOFTWARESIA A:408 , GAL A:410 , GAL A:411BINDING SITE FOR RESIDUE NAG A 409
10BC1SOFTWAREVAL A:177 , GLU A:181 , NAG A:409BINDING SITE FOR RESIDUE GAL A 410
11BC2SOFTWAREASN A:215 , NAG A:409BINDING SITE FOR RESIDUE GAL A 411
12BC3SOFTWAREGLU A:71 , ASP A:109 , LYS A:110BINDING SITE FOR RESIDUE CA A 412
13BC4SOFTWAREASN B:79 , ASN B:82 , HOH B:612BINDING SITE FOR RESIDUE NAG B 500
14BC5SOFTWAREASN C:12 , ASN C:28 , NAG C:402 , FUC C:404 , ASN I:267BINDING SITE FOR RESIDUE NAG C 401
15BC6SOFTWARENAG C:401 , BMA C:403 , FUC C:404 , HOH C:514BINDING SITE FOR RESIDUE NAG C 402
16BC7SOFTWARENAG C:402BINDING SITE FOR RESIDUE BMA C 403
17BC8SOFTWARENAG C:401 , NAG C:402 , HOH C:513 , VAL I:264 , ASP I:265 , ALA I:266BINDING SITE FOR RESIDUE FUC C 404
18BC9SOFTWAREASN C:28 , THR C:30 , THR C:309 , NAG C:406 , HOH C:521BINDING SITE FOR RESIDUE NAG C 405
19CC1SOFTWARETHR C:30 , NAG C:405 , BMA C:407 , HOH C:521BINDING SITE FOR RESIDUE NAG C 406
20CC2SOFTWARENAG C:406BINDING SITE FOR RESIDUE BMA C 407
21CC3SOFTWARETYR C:88 , ALA C:125 , THR C:126 , SER C:127 , TRP C:142 , LEU C:144 , HIS C:174 , GLU C:181 , LEU C:185 , NAG C:409 , HOH C:506 , HOH C:538BINDING SITE FOR RESIDUE SIA C 408
22CC4SOFTWARELEU C:217 , SIA C:408 , GAL C:410BINDING SITE FOR RESIDUE NAG C 409
23CC5SOFTWAREGLU C:181 , NAG C:409BINDING SITE FOR RESIDUE GAL C 410
24CC6SOFTWAREGLU C:71 , ASP C:109 , LYS C:110BINDING SITE FOR RESIDUE CA C 411
25CC7SOFTWAREASN D:79 , ASN D:82 , GLU E:104BINDING SITE FOR RESIDUE NAG D 500
26CC8SOFTWAREASN E:12 , THR E:14 , ASN E:28 , NAG E:402 , FUC E:404 , ASN G:267BINDING SITE FOR RESIDUE NAG E 401
27CC9SOFTWARENAG E:401 , BMA E:403 , FUC E:404BINDING SITE FOR RESIDUE NAG E 402
28DC1SOFTWARENAG E:402BINDING SITE FOR RESIDUE BMA E 403
29DC2SOFTWARENAG E:401 , NAG E:402 , HOH E:510 , VAL G:264 , ALA G:266BINDING SITE FOR RESIDUE FUC E 404
30DC3SOFTWAREASN E:28 , THR E:30 , THR E:309 , NAG E:406BINDING SITE FOR RESIDUE NAG E 405
31DC4SOFTWARETHR E:30 , NAG E:405 , BMA E:407 , HOH E:532BINDING SITE FOR RESIDUE NAG E 406
32DC5SOFTWARENAG E:406 , HOH E:532 , HOH E:537BINDING SITE FOR RESIDUE BMA E 407
33DC6SOFTWARETYR E:88 , ALA E:125 , THR E:126 , SER E:127 , TRP E:142 , LEU E:144 , HIS E:174 , GLU E:181 , LEU E:185 , NAG E:409 , HOH E:530BINDING SITE FOR RESIDUE SIA E 408
34DC7SOFTWARESIA E:408BINDING SITE FOR RESIDUE NAG E 409
35DC8SOFTWAREGLU E:71 , ASP E:109 , LYS E:110BINDING SITE FOR RESIDUE CA E 410
36DC9SOFTWAREGLU A:104 , ASN F:79 , ASN F:82BINDING SITE FOR RESIDUE NAG F 500
37EC1SOFTWAREASN G:28 , THR G:30 , THR G:309 , NAG G:402BINDING SITE FOR RESIDUE NAG G 401
38EC2SOFTWARENAG G:401 , BMA G:403 , HOH G:506BINDING SITE FOR RESIDUE NAG G 402
39EC3SOFTWARENAG G:402 , HOH G:506BINDING SITE FOR RESIDUE BMA G 403
40EC4SOFTWARETYR G:88 , ALA G:125 , THR G:126 , SER G:127 , TRP G:142 , HIS G:174 , GLU G:181 , LEU G:185 , LEU G:217 , NAG G:405 , HOH G:503BINDING SITE FOR RESIDUE SIA G 404
41EC5SOFTWARESIA G:404 , GAL G:406 , GAL G:407BINDING SITE FOR RESIDUE NAG G 405
42EC6SOFTWAREVAL G:177 , GLU G:181 , NAG G:405BINDING SITE FOR RESIDUE GAL G 406
43EC7SOFTWARENAG G:405BINDING SITE FOR RESIDUE GAL G 407
44EC8SOFTWAREGLU G:71 , ASP G:109 , LYS G:110BINDING SITE FOR RESIDUE CA G 408
45EC9SOFTWAREASN H:79 , ASN H:82 , GLU I:104BINDING SITE FOR RESIDUE NAG H 500
46FC1SOFTWAREASN I:28 , THR I:30 , THR I:309 , NAG I:402BINDING SITE FOR RESIDUE NAG I 401
47FC2SOFTWARENAG I:401 , BMA I:403 , HOH I:528BINDING SITE FOR RESIDUE NAG I 402
48FC3SOFTWARENAG I:402 , HOH I:519BINDING SITE FOR RESIDUE BMA I 403
49FC4SOFTWARETYR I:88 , ALA I:125 , THR I:126 , SER I:127 , TRP I:142 , HIS I:174 , GLU I:181 , LEU I:185 , NAG I:405 , HOH I:502BINDING SITE FOR RESIDUE SIA I 404
50FC5SOFTWARESIA I:404 , GAL I:406BINDING SITE FOR RESIDUE NAG I 405
51FC6SOFTWAREGLU I:181 , NAG I:405BINDING SITE FOR RESIDUE GAL I 406
52FC7SOFTWAREGLU I:71 , ASP I:109 , LYS I:110BINDING SITE FOR RESIDUE CA I 407
53FC8SOFTWAREASN J:79 , ASN J:82 , GLU K:104BINDING SITE FOR RESIDUE NAG J 500
54FC9SOFTWAREASN K:28 , THR K:30 , THR K:309 , NAG K:402 , HOH K:522BINDING SITE FOR RESIDUE NAG K 401
55GC1SOFTWARENAG K:401 , BMA K:403 , HOH K:539BINDING SITE FOR RESIDUE NAG K 402
56GC2SOFTWARENAG K:402 , HOH K:548 , HOH K:550BINDING SITE FOR RESIDUE BMA K 403
57GC3SOFTWARETYR K:88 , ALA K:125 , THR K:126 , SER K:127 , TRP K:142 , HIS K:174 , GLU K:181 , LEU K:185 , NAG K:405 , HOH K:509BINDING SITE FOR RESIDUE SIA K 404
58GC4SOFTWARELEU K:217 , SIA K:404 , GAL K:406 , GAL K:407 , HOH K:546BINDING SITE FOR RESIDUE NAG K 405
59GC5SOFTWAREVAL K:177 , NAG K:405 , HOH K:546BINDING SITE FOR RESIDUE GAL K 406
60GC6SOFTWARENAG K:405 , HOH K:510 , HOH K:521 , HOH K:526BINDING SITE FOR RESIDUE GAL K 407
61GC7SOFTWAREGLU K:71 , ASP K:109 , LYS K:110BINDING SITE FOR RESIDUE CA K 408
62GC8SOFTWAREGLU G:104 , ASN L:79 , ASN L:82BINDING SITE FOR RESIDUE NAG L 500

(-) SS Bonds  (36, 36)

Asymmetric Unit
No.Residues
1A:4 -B:137
2A:42 -A:268
3A:54 -A:66
4A:87 -A:129
5A:272 -A:296
6B:144 -B:148
7C:4 -D:137
8C:42 -C:268
9C:54 -C:66
10C:87 -C:129
11C:272 -C:296
12D:144 -D:148
13E:4 -F:137
14E:42 -E:268
15E:54 -E:66
16E:87 -E:129
17E:272 -E:296
18F:144 -F:148
19G:4 -H:137
20G:42 -G:268
21G:54 -G:66
22G:87 -G:129
23G:272 -G:296
24H:144 -H:148
25I:4 -J:137
26I:42 -I:268
27I:54 -I:66
28I:87 -I:129
29I:272 -I:296
30J:144 -J:148
31K:4 -L:137
32K:42 -K:268
33K:54 -K:66
34K:87 -K:129
35K:272 -K:296
36L:144 -L:148

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LN8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LN8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LN8)

(-) Exons   (0, 0)

(no "Exon" information available for 4LN8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4ln8a_ A: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......ee.....eee......hhhhhhhhhhhhhh.....eeee..............hhhhhhhhhhh...eeeee.......ee....eeeee...ee....eee.ee.........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee......ee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 A   1 DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNIPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKEAMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRKSPALIVWGIHHSVSTAEQTKLYGSGNKLVTVGSSNYQQSFVPSPGARPQVNGLSGRIDFHWLMLNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNIDSRAVGKCPRYVKQRSLLLATGMKNVPE 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      


Chain B from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains d4ln8b_ B: automated matches                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 B   5 AIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFNEVEKQIGNVINWTRDSITEVWSYNAELLVAMENQHTIDLADSEMDKLYERVKRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRI 171
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       


Chain C from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4ln8c_ C: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......ee.....eee......hhhhhhhhhhhhhh.....eeee..............hhhhhhhhhhh...eeeee.......ee....eeeee...ee....eee.ee.........eeeeee......eeeeeeeee....hhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee......ee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 C   1 DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNIPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKEAMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRKSPALIVWGIHHSVSTAEQTKLYGSGNKLVTVGSSNYQQSFVPSPGARPQVNGLSGRIDFHWLMLNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNIDSRAVGKCPRYVKQRSLLLATGMKNVPE 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      


Chain D from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains d4ln8d_ D: automated matches                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 D   5 AIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFNEVEKQIGNVINWTRDSITEVWSYNAELLVAMENQHTIDLADSEMDKLYERVKRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRI 171
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       


Chain E from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4ln8e_ E: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......ee.....eee......hhhhhhhhhhhhhh.....eeee..............hhhhhhhhhhh...eeeee.......ee....eeeee...ee....eee.ee.........eeeeee......eeeeeeeee....hhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee......ee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 E   1 DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNIPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKEAMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRKSPALIVWGIHHSVSTAEQTKLYGSGNKLVTVGSSNYQQSFVPSPGARPQVNGLSGRIDFHWLMLNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNIDSRAVGKCPRYVKQRSLLLATGMKNVPE 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      


Chain F from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains d4ln8f_ F: automated matches                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 F   5 AIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFNEVEKQIGNVINWTRDSITEVWSYNAELLVAMENQHTIDLADSEMDKLYERVKRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRI 171
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       


Chain G from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4ln8g_ G: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......ee.....eee......hhhhhhhhhhhhhh.....eeee..............hhhhhhhhhhh...eeeee.......ee....eeeee...ee....eee.ee.........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee......eee..ee......eee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 G   1 DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNIPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKEAMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRKSPALIVWGIHHSVSTAEQTKLYGSGNKLVTVGSSNYQQSFVPSPGARPQVNGLSGRIDFHWLMLNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNIDSRAVGKCPRYVKQRSLLLATGMKNVPE 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      


Chain H from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains d4ln8h_ H: automated matches                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.....ee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 H   5 AIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFNEVEKQIGNVINWTRDSITEVWSYNAELLVAMENQHTIDLADSEMDKLYERVKRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRI 171
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       


Chain I from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4ln8i_ I: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......ee.....eee......hhhhhhhhhhhhhh.....eeee..............hhhhhhhhhhh...eeeee.......ee....eeeee...ee....eee.ee.........eeeeee......eeeeeeeee....hhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee......eee..ee......eee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 I   1 DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNIPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKEAMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRKSPALIVWGIHHSVSTAEQTKLYGSGNKLVTVGSSNYQQSFVPSPGARPQVNGLSGRIDFHWLMLNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNIDSRAVGKCPRYVKQRSLLLATGMKNVPE 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      


Chain J from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains d4ln8j_ J: automated matches                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.....ee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 J   5 AIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFNEVEKQIGNVINWTRDSITEVWSYNAELLVAMENQHTIDLADSEMDKLYERVKRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRI 171
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       


Chain K from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4ln8k_ K: automated matches                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......ee.....eee......hhhhhhhhhhhhhh.....eeee..............hhhhhhhhhhh...eeeee.......ee....eeeee...ee....eee.ee.........eeeeee......eeeeeeeee....hhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee......eee..ee......eee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 K   1 DKICLGHHAVSNGTKVNTLTERGVEVVNATETVERTNIPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGSDVCYPGKFVNEEALRQILRESGGIDKEAMGFTYSGIRTNGATSACRRSGSSFYAEMKWLLSNTDNAAFPQMTKSYKNTRKSPALIVWGIHHSVSTAEQTKLYGSGNKLVTVGSSNYQQSFVPSPGARPQVNGLSGRIDFHWLMLNPNDTVTFSFNGAFIAPDRASFLRGKSMGIQSGVQVDANCEGDCYHSGGTIISNLPFQNIDSRAVGKCPRYVKQRSLLLATGMKNVPE 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      


Chain L from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains d4ln8l_ L: automated matches                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.....ee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ln8 L   5 AIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIEKTNQQFELIDNEFNEVEKQIGNVINWTRDSITEVWSYNAELLVAMENQHTIDLADSEMDKLYERVKRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHSKYREEAMQNRI 171
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

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(-)
Class: All beta proteins (24004)
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LN8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LN8)

(-) Gene Ontology  (18, 18)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        R4NN21_9INFA | R4NN21: 5vjk 5vjl 5vjm
UniProtKB/TrEMBL
        R4NN21_9INFA | R4NN21: 4ln3 4ln4 4ln6 4n5j 4n5k 4n60 4n61 4n62 4n63 4n64 5t6s

(-) Related Entries Specified in the PDB File

4kth 4kw1 4kwm 4ln3 4ln4 4ln6