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4LN8
Biol. Unit 4
Info
Asym.Unit (996 KB)
Biol.Unit 1 (497 KB)
Biol.Unit 2 (173 KB)
Biol.Unit 3 (172 KB)
Biol.Unit 4 (172 KB)
Biol.Unit 5 (491 KB)
Biol.Unit 6 (171 KB)
Biol.Unit 7 (169 KB)
Biol.Unit 8 (170 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HEMAGGLUTININ FROM A H7N9 INFLUENZA VIRUS (A/SHANGHAI/2/2013) IN COMPLEX WITH LSTB
Authors
:
H. Yang, P. J. Carney, J. C. Chang, J. M. Villanueva, J. Stevens
Date
:
11 Jul 13 (Deposition) - 02 Oct 13 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F (1x)
Biol. Unit 5: G,H,I,J,K,L (1x)
Biol. Unit 6: G,H (1x)
Biol. Unit 7: I,J (1x)
Biol. Unit 8: K,L (1x)
Keywords
:
Receptor Specificity, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yang, P. J. Carney, J. C. Chang, J. M. Villanueva, J. Stevens
Structural Analysis Of The Hemagglutinin From The Recent 2013 H7N9 Influenza Virus.
J. Virol. V. 87 12433 2013
[
close entry info
]
Hetero Components
(4, 10)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
3c: ALPHA-L-FUCOSE (FUCc)
4a: BETA-D-GALACTOSE (GALa)
4b: BETA-D-GALACTOSE (GALb)
4c: BETA-D-GALACTOSE (GALc)
4d: BETA-D-GALACTOSE (GALd)
4e: BETA-D-GALACTOSE (GALe)
4f: BETA-D-GALACTOSE (GALf)
4g: BETA-D-GALACTOSE (GALg)
4h: BETA-D-GALACTOSE (GALh)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
5ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
5ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
5ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
5w: N-ACETYL-D-GLUCOSAMINE (NAGw)
5x: N-ACETYL-D-GLUCOSAMINE (NAGx)
5y: N-ACETYL-D-GLUCOSAMINE (NAGy)
5z: N-ACETYL-D-GLUCOSAMINE (NAGz)
6a: O-SIALIC ACID (SIAa)
6b: O-SIALIC ACID (SIAb)
6c: O-SIALIC ACID (SIAc)
6d: O-SIALIC ACID (SIAd)
6e: O-SIALIC ACID (SIAe)
6f: O-SIALIC ACID (SIAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
GAL
-1
Ligand/Ion
BETA-D-GALACTOSE
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SIA
1
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: CC7 (SOFTWARE)
02: CC8 (SOFTWARE)
03: CC9 (SOFTWARE)
04: DC1 (SOFTWARE)
05: DC2 (SOFTWARE)
06: DC3 (SOFTWARE)
07: DC4 (SOFTWARE)
08: DC5 (SOFTWARE)
09: DC6 (SOFTWARE)
10: DC7 (SOFTWARE)
11: DC8 (SOFTWARE)
12: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC7
SOFTWARE
ASN D:79 , ASN D:82 , GLU E:104
BINDING SITE FOR RESIDUE NAG D 500
02
CC8
SOFTWARE
ASN E:12 , THR E:14 , ASN E:28 , NAG E:402 , FUC E:404 , ASN G:267
BINDING SITE FOR RESIDUE NAG E 401
03
CC9
SOFTWARE
NAG E:401 , BMA E:403 , FUC E:404
BINDING SITE FOR RESIDUE NAG E 402
04
DC1
SOFTWARE
NAG E:402
BINDING SITE FOR RESIDUE BMA E 403
05
DC2
SOFTWARE
NAG E:401 , NAG E:402 , HOH E:510 , VAL G:264 , ALA G:266
BINDING SITE FOR RESIDUE FUC E 404
06
DC3
SOFTWARE
ASN E:28 , THR E:30 , THR E:309 , NAG E:406
BINDING SITE FOR RESIDUE NAG E 405
07
DC4
SOFTWARE
THR E:30 , NAG E:405 , BMA E:407 , HOH E:532
BINDING SITE FOR RESIDUE NAG E 406
08
DC5
SOFTWARE
NAG E:406 , HOH E:532 , HOH E:537
BINDING SITE FOR RESIDUE BMA E 407
09
DC6
SOFTWARE
TYR E:88 , ALA E:125 , THR E:126 , SER E:127 , TRP E:142 , LEU E:144 , HIS E:174 , GLU E:181 , LEU E:185 , NAG E:409 , HOH E:530
BINDING SITE FOR RESIDUE SIA E 408
10
DC7
SOFTWARE
SIA E:408
BINDING SITE FOR RESIDUE NAG E 409
11
DC8
SOFTWARE
GLU E:71 , ASP E:109 , LYS E:110
BINDING SITE FOR RESIDUE CA E 410
12
DC9
SOFTWARE
GLU A:104 , ASN F:79 , ASN F:82
BINDING SITE FOR RESIDUE NAG F 500
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d4ln8a_ (A:)
1b: SCOP_d4ln8c_ (C:)
1c: SCOP_d4ln8e_ (E:)
1d: SCOP_d4ln8g_ (G:)
1e: SCOP_d4ln8i_ (I:)
1f: SCOP_d4ln8k_ (K:)
2a: SCOP_d4ln8b_ (B:)
2b: SCOP_d4ln8d_ (D:)
2c: SCOP_d4ln8f_ (F:)
2d: SCOP_d4ln8h_ (H:)
2e: SCOP_d4ln8j_ (J:)
2f: SCOP_d4ln8l_ (L:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Influenza a virus [TaxId: 1332244]
(9)
1a
d4ln8a_
A:
1b
d4ln8c_
C:
1c
d4ln8e_
E:
1d
d4ln8g_
G:
1e
d4ln8i_
I:
1f
d4ln8k_
K:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
automated matches
(59)
Influenza a virus [TaxId: 1332244]
(9)
2a
d4ln8b_
B:
2b
d4ln8d_
D:
2c
d4ln8f_
F:
2d
d4ln8h_
H:
2e
d4ln8j_
J:
2f
d4ln8l_
L:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain E
Chain F
Asymmetric Unit 1
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