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(-) Description

Title :  STRUCTURE OF MOUSE CGAS BOUND TO AN 18BP DNA AND CGAS PRODUCT
 
Authors :  P. Li
Date :  26 Jun 13  (Deposition) - 25 Dec 13  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.36
Chains :  Asym./Biol. Unit :  A,C,E,F,I,J
Keywords :  Ntase, Dna Sensor, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Li, C. Shu, G. Yi, C. T. Chaton, C. L. Shelton, J. Diao, X. Zuo, C. C. Kao A. B. Herr, P. Li
Cyclic Gmp-Amp Synthase Is Activated By Double-Stranded Dna-Induced Oligomerization.
Immunity V. 39 1019 2013
PubMed-ID: 24332030  |  Reference-DOI: 10.1016/J.IMMUNI.2013.10.019

(-) Compounds

Molecule 1 - CYCLIC GMP-AMP SYNTHASE
    Chains: A, C
    EC Number: 2.7.7.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: MOUSE CGAS CATALYTIC DOMAIN, UNP RESIDUES 142-507
    Gene: MB21D1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: CGAMP SYNTHASE, CGAS, M-CGAS, MAB-21 DOMAIN-CONTAINING PROTEIN 1
 
Molecule 2 - 18BP DSDNA
    Chains: E, F, I, J
    Engineered: YES
    Other Details: SYNTHETIC 18 BP DSDNA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ACEFIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
11SY2Ligand/IonCGAMP
2ZN2Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:378 , CYS A:384 , CYS A:385 , CYS A:392BINDING SITE FOR RESIDUE ZN A 601
2AC2SOFTWAREASP A:213 , GLY A:290 , PRO A:292 , ASP A:307 , ILE A:309 , ARG A:364 , LEU A:365 , SER A:366 , CYS A:419 , HOH A:760BINDING SITE FOR RESIDUE 1SY A 602
3AC3SOFTWAREHIS C:378 , CYS C:384 , CYS C:385 , CYS C:392BINDING SITE FOR RESIDUE ZN C 601
4AC4SOFTWAREASP C:213 , GLY C:290 , PRO C:292 , ASP C:307 , ILE C:309 , LYS C:350 , ARG C:364 , LEU C:365 , SER C:366 , SER C:368 , CYS C:419 , SER C:420 , TYR C:421BINDING SITE FOR RESIDUE 1SY C 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LEZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LEZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LEZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LEZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4LEZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.........eeeeehhhhh........eeeeeeeee....eeee......eeeee.........hhhhh.....hhhhhhhhhhhhhhhhhhh....eeee........eeeeeee...eeeeeeeeeeee....hhhhh.........hhhhhhhhhh..eeeee........hhhh.eeeehhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lez A 149 KLKKVLDKLRLKRKDISEAAETVNKVVERLLRRMQKRESEFKGVEQLNTGSYYEHVKISAPNEFDVMFKLEVPRIELQEYYETGAFYLVKFKRIPRGNPLSHFLEGEVLSATKMLSKFRKIIKEEVKEIKDIDVSVEKEKPGSPAVTLLIRNPEEISVDIILALESKGSWPISTKEGLPIQGWLGTKVRTNLRREPFYLVPKNAKDGNSFQGETWRLSFSHTEKYILNNHGIEKTCCESSGAKCCRKECLKLMKYLLEQLKKEFQELDAFCSYHVKTAIFHMWTQDPQDSQWDPRNLSSCFDKLLAFFLECLRTEKLDHYFIPKFNLFSQELIDRKSKEFLSKKIEYERNNGFPIFDKL 507
                                   158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498         


Chain C from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.............eeeeeeeee...eeeee......eeeeee..................hhhhhhhhhhhhhhhhhhh....eeee........eeeeeee...eeeeeeeeeeee....hhhhh.........hhhhhhhhhhh.eeee.........hhhhheeeehhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lez C 149 KLKKVLDKLRLKRKDISEAAETVNKVVERLLRRMQKRESEFKGVEQLNTGSYYEHVKISAPNEFDVMFKLEVPRIELQEYYETGAFYLVKFKRIPRGNPLSHFLEGEVLSATKMLSKFRKIIKEEVKEIKDIDVSVEKEKPGSPAVTLLIRNPEEISVDIILALESKGSWPISTKEGLPIQGWLGTKVRTNLRREPFYLVPKNAKDGNSFQGETWRLSFSHTEKYILNNHGIEKTCCESSGAKCCRKECLKLMKYLLEQLKKEFQELDAFCSYHVKTAIFHMWTQDPQDSQWDPRNLSSCFDKLLAFFLECLRTEKLDHYFIPKFNLFSQELIDRKSKEFLSKKIEYERNNGFPIFDKL 507
                                   158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498         


Chain E from PDB  Type:DNA  Length:18
                                                  
                 4lez E   1 ATCTGTACATGTACAGAT  18
                                    10        


Chain F from PDB  Type:DNA  Length:18
                                                  
                 4lez F   1 ATCTGTACATGTACAGAT  18
                                    10        


Chain I from PDB  Type:DNA  Length:18
                                                  
                 4lez I   1 ATCTGTACATGTACAGAT  18
                                    10        


Chain J from PDB  Type:DNA  Length:18
                                                  
                 4lez J   1 ATCTGTACATGTACAGAT  18
                                    10
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LEZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LEZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LEZ)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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  4lez
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  CGAS_MOUSE | Q8C6L5
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  2.7.7.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CGAS_MOUSE | Q8C6L5: 4k8v 4k96 4k97 4k98 4k99 4k9a 4k9b 4ley 4o6a

(-) Related Entries Specified in the PDB File

4lev 4lew 4ley