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(-) Description

Title :  STRUCTURE OF BINARY COMPLEX OF CGAS WITH BOUND DSDNA
 
Authors :  P. Gao, Y. Wu, D. J. Patel
Date :  19 Apr 13  (Deposition) - 15 May 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym. Unit :  A,B,E,F,G,H
Biol. Unit 1:  A,E,F  (1x)
Biol. Unit 2:  B,G,H  (1x)
Keywords :  Nucleotidyltransferase Fold, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Gao, M. Ascano, Y. Wu, W. Barchet, B. L. Gaffney, T. Zillinger, A. A. Serganov, Y. Liu, R. A. Jones, G. Hartmann, T. Tuschl, D. J. Patel
Cyclic [G(2', 5')Pa(3', 5')P] Is The Metazoan Second Messenge Produced By Dna-Activated Cyclic Gmp-Amp Synthase.
Cell(Cambridge, Mass. ) V. 153 1094 2013
PubMed-ID: 23647843  |  Reference-DOI: 10.1016/J.CELL.2013.04.046

(-) Compounds

Molecule 1 - CYCLIC GMP-AMP SYNTHASE
    Chains: A, B
    EC Number: 2.7.7.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-TERMINAL DOMAIN, UNP RESIDUES 147-507
    Gene: MB21D1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: CGAMP SYNTHASE, CGAS, M-CGAS, MAB-21 DOMAIN-CONTAINING PROTEIN 1
 
Molecule 2 - DNA-F
    Chains: E, G
    Engineered: YES
    Other Details: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL
    Synthetic: YES
 
Molecule 3 - DNA-R
    Chains: F, H
    Engineered: YES
    Other Details: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABEFGH
Biological Unit 1 (1x): A EF  
Biological Unit 2 (1x):  B  GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:378 , CYS A:384 , CYS A:385 , CYS A:392BINDING SITE FOR RESIDUE ZN A 601
2AC2SOFTWAREASN B:376 , ASN B:377 , HIS B:378 , CYS B:384 , HOH B:706 , HOH B:856BINDING SITE FOR RESIDUE ZN B 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K96)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asn A:300 -Pro A:301
2Asn B:300 -Pro B:301

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K96)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K96)

(-) Exons   (0, 0)

(no "Exon" information available for 4K96)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:355
                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..........eeeee.............eeeeeeeee...eeeee......eeeeee......hhh.ee..eehhhhhhhhhhhhhhhhhh.....eeee........eeeeeee...eeeeeeeeeeee....hhhhh.........hhhhhhhhh...eeeee.............eeeehhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k96 A 149 KLKKVLDKLRLKRKDISEAAETVNKVVERLLRRMQKRESEFKGVEQLNTGSYYEHVKISAPNEFDVMFKLEVPRIELQEYYETGAFYLVKFKPRGNPLSHFLEGEVLSATKMLSKFRKIIKEEVKEIKDIDVSVEKEKPGSPAVTLLIRNPEEISVDIILALESKGSWPISTKEGLPIQGWLGTKVRTNLRREPFYLVPKNAKDGNSFQGETWRLSFSHTEKYILNNHGIEKTCCESSGAKCCRKECLKLMKYLLEQLKKEFQELDAFCSYHVKTAIFHMWTQDPQDSQWDPRNLSSCFDKLLAFFLECLRTEKLDHYFIPKFNLFSQELIDRKSKEFLSKKIEYERNNGFPIFD 505
                                   158       168       178       188       198       208       218       228       238 ||    250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500     
                                                                                                                     240|                                                                                                                                                                                                                                                                      
                                                                                                                      243                                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.........eeeee.............eeeeeeeee...eeeee......eeeeee......hhh.ee..eehhhhhhhhhhhhhhhhhh.....eeee........eeeeeee...eeeeeeeeeeee....hhhhh.........hhhhhhhhh...eeeee............eeeeehhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k96 B 146 SPDKLKKVLDKLRLKRKDISEAAETVNKVVERLLRRMQKRESEFKGVEQLNTGSYYEHVKISAPNEFDVMFKLEVPRIELQEYYETGAFYLVKFKPRGNPLSHFLEGEVLSATKMLSKFRKIIKEEVKEIKDIDVSVEKEKPGSPAVTLLIRNPEEISVDIILALESKGSWPISTKEGLPIQGWLGTKVRTNLRREPFYLVPKNAKDGNSFQGETWRLSFSHTEKYILNNHGIEKTCCESSGAKCCRKECLKLMKYLLEQLKKEFQELDAFCSYHVKTAIFHMWTQDPQDSQWDPRNLSSCFDKLLAFFLECLRTEKLDHYFIPKFNLFSQELIDRKSKEFLSKKIEYERNNGFPIFD 505
                                   155       165       175       185       195       205       215       225       235    || 247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497        
                                                                                                                        240|                                                                                                                                                                                                                                                                      
                                                                                                                         243                                                                                                                                                                                                                                                                      


Chain E from PDB  Type:DNA  Length:17
                                                 
                 4k96 E   1 AAATTGCCGAAGACGAA  17
                                    10       


Chain F from PDB  Type:DNA  Length:17
                                                 
                 4k96 F   1 TTTCGTCTTCGGCAATT  17
                                    10       


Chain G from PDB  Type:DNA  Length:17
                                                 
                 4k96 G   1 AAATTGCCGAAGACGAA  17
                                    10       


Chain H from PDB  Type:DNA  Length:17
                                                 
                 4k96 H   1 TTTCGTCTTCGGCAATT  17
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K96)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K96)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K96)

(-) Gene Ontology  (18, 18)

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  4k96
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  2.7.7.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CGAS_MOUSE | Q8C6L5: 4k8v 4k97 4k98 4k99 4k9a 4k9b 4ley 4lez 4o6a

(-) Related Entries Specified in the PDB File

4k8v 4k97 4k98 4k99 4k9a 4k9b