4LB9 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   X-RAY STUDY OF HUMAN SERUM ALBUMIN COMPLEXED WITH ETOPOSIDE

Authors :   Z. Wang, J. X. Ho, J. Ruble, J. P. Rose, D. C. Carter

Date :   20 Jun 13 (Deposition) - 24 Jul 13 (Release) - 19 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : A

Keywords :   Plasma Protein, Cancer, Oncology Drug Complex, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. M. Wang, J. X. Ho, J. R. Ruble, J. Rose, F. Ruker, M. Ellenburg, R. Murphy, J. Click, E. Soistman, L. Wilkerson, D. C. Carter
Structural Studies Of Several Clinically Important Oncology Drugs In Complex With Human Serum Albumin.
Biochim. Biophys. Acta V. 1830 5356 2013
PubMed-ID: 23838380 | Reference-DOI: 10.1016/J.BBAGEN.2013.06.032
(for further references see the PDB file header)

Molecule 1 - SERUM ALBUMIN
	Chains	:	A
	Fragment	:	UNP RESIDUES 25-609
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 5)

No.	Name	Count	Type	Full Name
1	EVP	1	Ligand/Ion	(5S,5AR,8AR,9R)-9-(4-HYDROXY-3,5-DIMETHOXYPHENYL)-8-OXO-5,5A,6,8,8A,9-HEXAHYDROFURO[3',4':6,7]NAPHTHO[2,3-D][1,3]DIOXOL-5-YL 4,6-O-[(1R)-ETHYLIDENE]-BETA-D-GLUCOPYRANOSIDE
2	MYR	4	Ligand/Ion	MYRISTIC ACID

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:22 , VAL A:23 , LEU A:66 , PHE A:70 , TYR A:150 , ALA A:254 , ARG A:257 , LEU A:283 , LEU A:284 , SER A:287	BINDING SITE FOR RESIDUE MYR A 601
2	AC2	SOFTWARE	SER A:342 , VAL A:344 , ARG A:348 , LEU A:430 , ARG A:485 , MYR A:603	BINDING SITE FOR RESIDUE MYR A 602
3	AC3	SOFTWARE	LEU A:387 , ASN A:391 , ARG A:410 , TYR A:411 , VAL A:415 , LEU A:460 , VAL A:473 , PHE A:488 , SER A:489 , MYR A:602	BINDING SITE FOR RESIDUE MYR A 603
4	AC4	SOFTWARE	TYR A:401 , PHE A:507 , LYS A:525 , VAL A:547 , PHE A:551	BINDING SITE FOR RESIDUE MYR A 604
5	AC5	SOFTWARE	ASP A:108 , HIS A:146 , TYR A:148 , SER A:193 , ARG A:197 , CYS A:200 , ALA A:201 , GLN A:204 , CYS A:246 , HIS A:247 , GLY A:248 , GLU A:280 , HOH A:701	BINDING SITE FOR RESIDUE EVP A 605

Asymmetric/Biological Unit

No.	Residues
1	A:53	-	A:62
2	A:75	-	A:91
3	A:90	-	A:101
4	A:124	-	A:169
5	A:168	-	A:177
6	A:200	-	A:246
7	A:245	-	A:253
8	A:265	-	A:279
9	A:278	-	A:289
10	A:316	-	A:361
11	A:360	-	A:369
12	A:392	-	A:438
13	A:437	-	A:448
14	A:461	-	A:477
15	A:476	-	A:487
16	A:514	-	A:559
17	A:558	-	A:567

(no "Cis Peptide Bond" information available for 4LB9)

(no "SAP(SNP)/Variant" information available for 4LB9)

(no "PROSITE Motif" information available for 4LB9)

(no "Exon" information available for 4LB9)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:583
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4lb9a1 A:2-196 Serum albumin                                                                                                                                                                      d4lb9a2 A:197-388 Serum albumin                                                                                                                                                                 d4lb9a3 A:389-584 Serum albumin                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.............hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhh...................hhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lb9 A   2 AHKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQAALG 584
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Serum albumin-like (99)

Superfamily: Serum albumin-like (99)

Family: Serum albumin-like (75)

Protein domain: Serum albumin (69)

Human (Homo sapiens) [TaxId: 9606] (69)

1a	d4lb9a1	A:2-196
1b	d4lb9a2	A:197-388
1c	d4lb9a3	A:389-584

(no "CATH Domain" information available for 4LB9)

(no "Pfam Domain" information available for 4LB9)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 5)

Sites (5, 5)

SS Bonds (17, 17)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (45, 45)

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