5X52 - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   HUMAN SERUM ALBUMIN COMPLEXED WITH OCTANOATE AND N-ACETYL-L-METHIONINE

Authors :   A. Kawai, M. Otagiri

Date :   14 Feb 17 (Deposition) - 17 May 17 (Release) - 21 Jun 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.01

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Kawai, V. T. G. Chuang, Y. Kouno, K. Yamasaki, S. Miyamoto, M. Anraku M. Otagiri
Crystallographic Analysis Of The Ternary Complex Of Octanoate And N-Acetyl-L-Methionine With Human Serum Albumi Reveals The Mode Of Their Stabilizing Interactions
Biochim. Biophys. Acta V. 1865 979 2017
PubMed-ID: 28473296 | Reference-DOI: 10.1016/J.BBAPAP.2017.04.004

Molecule 1 - SERUM ALBUMIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	PICHIA
	Expression System Taxid	:	4919
	Gene	:	ALB, GIG20, GIG42, PRO0903, PRO1708, PRO2044, PRO2619, PRO2675, UNQ696/PRO1341
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 7)

No.	Name	Count	Type	Full Name
1	AME	2	Ligand/Ion	N-ACETYLMETHIONINE
2	OCA	3	Ligand/Ion	OCTANOIC ACID (CAPRYLIC ACID)
3	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	AME	1	Ligand/Ion	N-ACETYLMETHIONINE
2	OCA	2	Ligand/Ion	OCTANOIC ACID (CAPRYLIC ACID)
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	AME	1	Ligand/Ion	N-ACETYLMETHIONINE
2	OCA	1	Ligand/Ion	OCTANOIC ACID (CAPRYLIC ACID)
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:195 , ARG A:218 , ARG A:222 , OCA A:603	binding site for residue AME A 601
2	AC2	SOFTWARE	ASN A:391 , LEU A:407 , ARG A:410 , TYR A:411 , LYS A:414 , SER A:489	binding site for residue OCA A 602
3	AC3	SOFTWARE	LYS A:199 , TRP A:214 , ARG A:218 , ARG A:222 , LEU A:238 , ILE A:290 , AME A:601	binding site for residue OCA A 603
4	AC4	SOFTWARE	ARG A:186 , LYS A:190 , ARG A:428 , LYS A:432	binding site for residue PO4 A 604
5	AC5	SOFTWARE	LYS B:195 , ARG B:218 , ARG B:222	binding site for residue AME B 601
6	AC6	SOFTWARE	LEU B:219 , ARG B:222 , ARG B:257 , ILE B:290 , ALA B:291	binding site for residue OCA B 602
7	AC7	SOFTWARE	ARG B:186 , LYS B:190 , ARG B:428 , LYS B:432 , LYS B:519	binding site for residue PO4 B 603

Asymmetric Unit

No.	Residues
1	A:53	-	A:62
2	A:75	-	A:91
3	A:90	-	A:101
4	A:124	-	A:169
5	A:168	-	A:177
6	A:200	-	A:246
7	A:245	-	A:253
8	A:265	-	A:279
9	A:278	-	A:289
10	A:316	-	A:361
11	A:360	-	A:369
12	A:392	-	A:438
13	A:437	-	A:448
14	A:476	-	A:487
15	A:514	-	A:559
16	A:558	-	A:567
17	B:53	-	B:62
18	B:75	-	B:91
19	B:90	-	B:101
20	B:124	-	B:169
21	B:168	-	B:177
22	B:200	-	B:246
23	B:245	-	B:253
24	B:265	-	B:279
25	B:278	-	B:289
26	B:316	-	B:361
27	B:360	-	B:369
28	B:392	-	B:438
29	B:437	-	B:448
30	B:461	-	B:477
31	B:476	-	B:487
32	B:514	-	B:559
33	B:558	-	B:567

Asymmetric Unit

No.	Residues
1	Glu A:95	-	Pro A:96
2	Glu B:95	-	Pro B:96
3	Asp B:562	-	Asp B:563

(no "SAP(SNP)/Variant" information available for 5X52)

(no "PROSITE Motif" information available for 5X52)

(no "Exon" information available for 5X52)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:571
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhh.............hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5x52 A   3 HKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGK 573
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572

Chain B from PDB  Type:PROTEIN  Length:565
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh........hhhhhhh.....hhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhh............hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5x52 B   3 HKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLREGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFA 569
                                    12        22        32        42        52        62        72        82|       94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564     
                                                                                                          82|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
                                                                                                           85

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5X52)

(no "CATH Domain" information available for 5X52)

(no "Pfam Domain" information available for 5X52)

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	Cis Peptide Bonds
		Asp B:562 - Asp B:563	[ RasMol ]
		Glu A:95 - Pro A:96	[ RasMol ]
		Glu B:95 - Pro B:96	[ RasMol ]

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	5x52
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Sites (7, 7)

SS Bonds (33, 33)

Cis Peptide Bonds (3, 3)

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