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(-) Description

Title :  STRUCTURE OF NATIVE RBP FROM LACTOCOCCAL PHAGE 1358 (CSI DERIVATIVE)
 
Authors :  C. Farenc, S. Spinelli, C. Bebeacua, D. Tremblay, I. Orlov, S. Blangy, B. P. Klaholz, S. Moineau, C. Cambillau
Date :  18 Jun 13  (Deposition) - 30 Apr 14  (Release) - 30 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Beta Sandwich Domain, Phage Receptor Binding Protein, Lactococcus Lactis Pellicle Cell Wall Polyphosphosaccharide, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Farenc, S. Spinelli, C. Bebeacua, D. Tremblay, I. Orlov, S. Blangy, B. P. Klaholz, S. Moineau, C. Cambillau
A Virulent Siphophage Cyoem Structure And Host Recognition And Infection Mechanism
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RECEPTOR BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETG20A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: ORF20
    Organism Scientific: LACTOCOCCUS PHAGE 1358
    Organism Taxid: 741942
    Synonym: RBP

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1CS6Ligand/IonCESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CS-1Ligand/IonCESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:45 , HOH A:753 , HOH A:755BINDING SITE FOR RESIDUE CS A 401
2AC2SOFTWAREGLY A:80 , SER A:82 , GLU A:84 , HOH A:521 , HOH A:641 , HOH A:811BINDING SITE FOR RESIDUE CS A 402
3AC3SOFTWARETYR A:164 , HOH A:678 , HOH A:733BINDING SITE FOR RESIDUE CS A 403
4AC4SOFTWARESER A:233 , GLN A:234 , HOH A:529BINDING SITE FOR RESIDUE CS A 404
5AC5SOFTWAREARG A:254BINDING SITE FOR RESIDUE CS A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L9B)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:71 -Pro A:72

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L9B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L9B)

(-) Exons   (0, 0)

(no "Exon" information available for 4L9B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....hhhhhhhhhhh....eeeee..eehhhh...eeee..eeeee..eeeee.....eeee......eeeeeeeeee................eeeeeehhhhhhhh...............eeeeeeeeeee.......eeee.hhhh.........eeeeee..eeee.....eee.....eeeee.....eeeee..eee....eee..........eee...eeeeeeeeeeee.............eeeeeeeee......hhhhh...........eeeeeeee.....eeeeeeeeeeee....eeeeeeee.............hhhhh.eeeeeeeeeeeee....hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l9b A   2 VLKGINFPENEASILDLAMQNRSGVLDGMTIDILNTTSNQLALFHGTAVLQGYGIEITGAPDVLVDTTGQSNETMLLCLTIDLNQVNVPSGTAVDYKQIRLEFLDVPTLLKQYWRDHSLHDLIDPRRVISMPLYWITFGQTGTTPLYEQIKSNYIDNSGNPAYGIAARCENFNHFINKVAVQSIPINGVANRPVSSTASQLTNYKVWRNPYLCSQDPRDKFAPDNLVIEEDGIYRIDISGSINIANYTFPARVGGRYFQIVCARNSSANNLAEFGAEQHLPPSGVWTRRVLVGEYTAGMTEQAFSSVATISLFKGDNFFLQFETGTNTSRDSAYNNGYGTSGTHLRNFSYTLERVGDLNGTAYYDNGTF 393
                                  ||17        27        37        47        57       |71        81        91       101 ||    117       127       137       147       157       167     ||179       189       199       209       219       229       239       249       259       269||     284       294       304       314       324       334       344       354       364       374       384         
                                  8|                                                65|                              103|                                                            173|                                                                                           270|                                                                                                                     
                                  15                                                 70                               110                                                             176                                                                                            276
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L9B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L9B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L9B)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D3W0F1_9CAUD | D3W0F1: 4l92 4l97 4l99 4rga 4rgg

(-) Related Entries Specified in the PDB File

4l92 4l97 4l99