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(-) Description

Title :  PHAGE 1358 RECEPTOR BINDING PROTEIN IN COMPLEX WITH THE TRISACCHARIDE GLCNAC-GALF-GLCOME
 
Authors :  S. Spinelli, O. Mccabe, C. Farenc, D. Tremblay, S. Blangy, S. Oscarson, S. Moineau, C. Cambillau
Date :  29 Sep 14  (Deposition) - 20 May 15  (Release) - 20 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B  (3x)
Keywords :  Alpha/Beta Protein, Phage Receptor Binding Protein, Lactococcus Lactis Smq388, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Mccabe, S. Spinelli, C. Farenc, M. Labbe, D. Tremblay, S. Blangy, S. Oscarson, S. Moineau, C. Cambillau
The Targeted Recognition Of Lactococcus Lactis Phages To Their Polysaccharide Receptors.
Mol. Microbiol. V. 96 875 2015
PubMed-ID: 25708888  |  Reference-DOI: 10.1111/MMI.12978

(-) Compounds

Molecule 1 - PHAGE 1358 RECEPTOR BINDING PROTEIN (ORF20)
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: ORF20
    Organism Scientific: LACTOCOCCUS PHAGE 1358
    Organism Taxid: 741942

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): A 
Biological Unit 2 (3x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
13PV2Ligand/IonMETHYL 2-(ACETYLAMINO)-2-DEOXY-BETA-D-GLUCOPYRANOSYL-(1->2)-BETA-D-GALACTOFURANOSYL-(1->6)-ALPHA-D-GLUCOPYRANOSIDE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
13PV3Ligand/IonMETHYL 2-(ACETYLAMINO)-2-DEOXY-BETA-D-GLUCOPYRANOSYL-(1->2)-BETA-D-GALACTOFURANOSYL-(1->6)-ALPHA-D-GLUCOPYRANOSIDE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
13PV3Ligand/IonMETHYL 2-(ACETYLAMINO)-2-DEOXY-BETA-D-GLUCOPYRANOSYL-(1->2)-BETA-D-GALACTOFURANOSYL-(1->6)-ALPHA-D-GLUCOPYRANOSIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:200 , GLN A:201 , SER A:202 , ARG A:237 , LYS A:239 , PHE A:240 , ASP A:243 , ASN A:244 , ASN A:289 , SER A:291 , ALA A:292 , ASN A:341 , PHE A:343 , GLN A:345 , HOH A:560 , HOH A:633 , HOH A:640 , HOH A:655 , HOH A:763 , HOH A:765BINDING SITE FOR RESIDUE 3PV A 401
2AC2SOFTWAREVAL B:200 , GLN B:201 , SER B:202 , ARG B:237 , LYS B:239 , PHE B:240 , ASP B:243 , ASN B:244 , ASN B:289 , SER B:291 , ALA B:292 , ASN B:341 , PHE B:343 , GLN B:345 , HOH B:621 , HOH B:739 , HOH B:740 , HOH B:749 , HOH B:754 , HOH B:776BINDING SITE FOR RESIDUE 3PV B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RGA)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:71 -Pro A:72
2Ala B:71 -Pro B:72

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RGA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RGA)

(-) Exons   (0, 0)

(no "Exon" information available for 4RGA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:390
                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhh....eeeee..ee.......eeee..eeeee..eeeee.......eeee.......eeeeeeeee.....eee........eee...eeeeeehhhhhhhh...............eeeeeeeeee........eeee.hhhh...........eeeeee..eeee.....eee.....eeeee.....eeeee..eee....eee..........eee...eeeeeeeeeeee.......hhhhh......eeeeeeeee......hhhhh...........eeeeeeee.....eeeeeeeeeeee....eeeeeeee.............hhhhh.eeeeeeeeeeeee....hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4rga A   2 VLKGINFDRSIVTPENEASILDLAMQNRSGVLDGMTIDILNTTSNQLALFHGTAVLQGYGIEITRAAAPDVLVDTTGQSNETMLLCLTIDLNQVNVPSGTVGTNTYAVDYKQIRLEFLDVPTLLKQYWRDHSLHDLIDPRRVISMPLYWITFGQTGTTPKYEQIKSNYIDGGNSGNPAYGIAARCENFNHFINKVAVQSIPINGVANRPVSSTASQLTNYKVWRNPYLCSQDPRDKFAPDNLVIEEDGIYRIDISGSINIANYTFPASGNSWRVGGRYFQIVCARNSSANNLAEFGAEQHLPPSGVWTRRVLVGEYTAGMTEQAFSSVATISLFKGDNFFLQFETGTNTSRDSAYNNGYGTSGTHLRNFSYTLERVGDLNGTAYYDNGTF 393
                                    11        21        31        41        51        61      ||73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393
                                                                                             68|                                                                                                                                                                                                                                                                                                                                  
                                                                                              71                                                                                                                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:390
                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhh....eeeee..ee.......eeee..eeeee..eeeee.......eeee.......eeeeeeeee.....eee........eee...eeeeeehhhhhhhh...............eeeeeeeeee........eeee.hhhh...........eeeeee..eeee.....eee.....eeeeeee..eeeeee..eee....eee..........eee...eeeeeeeeeeee.......hhhhh......eeeeeeeee......hhhhh...........eeeeeeee.....eeeeeeeeeeee....eeeeeeee.............hhhhh.eeeeeeeeeeeee....hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4rga B   2 VLKGINFDRSIVTPENEASILDLAMQNRSGVLDGMTIDILNTTSNQLALFHGTAVLQGYGIEITRAAAPDVLVDTTGQSNETMLLCLTIDLNQVNVPSGTVGTNTYAVDYKQIRLEFLDVPTLLKQYWRDHSLHDLIDPRRVISMPLYWITFGQTGTTPKYEQIKSNYIDGGNSGNPAYGIAARCENFNHFINKVAVQSIPINGVANRPVSSTASQLTNYKVWRNPYLCSQDPRDKFAPDNLVIEEDGIYRIDISGSINIANYTFPASGNSWRVGGRYFQIVCARNSSANNLAEFGAEQHLPPSGVWTRRVLVGEYTAGMTEQAFSSVATISLFKGDNFFLQFETGTNTSRDSAYNNGYGTSGTHLRNFSYTLERVGDLNGTAYYDNGTF 393
                                    11        21        31        41        51        61      ||73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393
                                                                                             68|                                                                                                                                                                                                                                                                                                                                  
                                                                                              71
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RGA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RGA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RGA)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D3W0F1_9CAUD | D3W0F1: 4l92 4l97 4l99 4l9b 4rgg

(-) Related Entries Specified in the PDB File

4l92 COMPLEX WITH TWO GLCNAC
4l97 COMPLEX WITH GLC1P
4l99 COMPLEX WITH GLYCEROL