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(-) Description

Title :  SP2-SP3 - A COMPLEX OF TWO STORAGE PROTEINS FROM BOMBYX MORI HEMOLYMPH
 
Authors :  A. J. Pietrzyk, A. Bujacz, J. Mueller-Dieckmann, M. Jaskolski, G. Buja
Date :  05 Jun 13  (Deposition) - 04 Dec 13  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Arylphorin, Hemocyanin-Like Fold, Storage Proteins, Bmsp2, Bmsp3, Hemolymph, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Pietrzyk, A. Bujacz, J. Mueller-Dieckmann, M. Ochynska, M. Jaskolski, G. Bujacz
Crystallographic Identification Of An Unexpected Protein Complex In Silkworm Haemolymph.
Acta Crystallogr. , Sect. D V. 69 2353 2013
PubMed-ID: 24311577  |  Reference-DOI: 10.1107/S0907444913021823

(-) Compounds

Molecule 1 - SILKWORM STORAGE PROTEIN
    Chains: A
    Organism Common: SILK MOTH,SILKWORM
    Organism Scientific: BOMBYX MORI
    Organism Taxid: 7091
    Synonym: UNCHARACTERIZED PROTEIN
 
Molecule 2 - ARYLPHORIN
    Chains: B
    Organism Common: SILK MOTH,SILKWORM
    Organism Scientific: BOMBYX MORI
    Organism Taxid: 7091
    Synonym: UNCHARACTERIZED PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 20)

Asymmetric Unit (6, 20)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN4Ligand/IonALPHA-D-MANNOSE
3NA3Ligand/IonSODIUM ION
4NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
5SCN5Ligand/IonTHIOCYANATE ION
6SO42Ligand/IonSULFATE ION
Biological Unit 1 (5, 51)
No.NameCountTypeFull Name
1BMA6Ligand/IonBETA-D-MANNOSE
2MAN12Ligand/IonALPHA-D-MANNOSE
3NA-1Ligand/IonSODIUM ION
4NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
5SCN15Ligand/IonTHIOCYANATE ION
6SO46Ligand/IonSULFATE ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:190 , ASN A:192 , TYR A:666 , ASN A:669 , ILE A:670 , PRO A:671 , NAG A:702BINDING SITE FOR RESIDUE NAG A 701
02AC2SOFTWAREILE A:670 , NAG A:701 , BMA A:703 , PRO B:524BINDING SITE FOR RESIDUE NAG A 702
03AC3SOFTWARENAG A:702 , MAN A:704 , MAN A:705BINDING SITE FOR RESIDUE BMA A 703
04AC4SOFTWAREBMA A:703BINDING SITE FOR RESIDUE MAN A 704
05AC5SOFTWAREBMA A:703BINDING SITE FOR RESIDUE MAN A 705
06AC6SOFTWARESER A:273 , TYR A:275 , HIS A:303 , TYR A:308 , ILE A:311 , ARG A:312BINDING SITE FOR RESIDUE SO4 A 706
07AC7SOFTWARETYR A:257 , PRO A:406 , GLN A:410BINDING SITE FOR RESIDUE NA A 707
08AC8SOFTWAREPRO A:383 , PRO A:385 , PHE A:391 , ILE A:392BINDING SITE FOR RESIDUE NA A 708
09AC9SOFTWAREHIS A:223 , PHE A:228 , TYR A:250 , GLN A:353 , GLU A:372 , TYR A:399BINDING SITE FOR RESIDUE SCN A 709
10BC1SOFTWAREASN A:582BINDING SITE FOR RESIDUE SCN A 710
11BC2SOFTWARETYR A:144 , ARG A:484 , LYS A:558 , ASP A:560 , SER A:561BINDING SITE FOR RESIDUE SCN A 711
12BC3SOFTWAREPHE A:519 , GLU B:158 , LYS B:193 , ASN B:195 , ALA B:199 , TYR B:670 , ASN B:673 , NAG B:702BINDING SITE FOR RESIDUE NAG B 701
13BC4SOFTWAREPRO B:675 , NAG B:701 , BMA B:703BINDING SITE FOR RESIDUE NAG B 702
14BC5SOFTWARENAG B:702 , MAN B:704 , MAN B:705BINDING SITE FOR RESIDUE BMA B 703
15BC6SOFTWAREPRO A:73 , BMA B:703BINDING SITE FOR RESIDUE MAN B 704
16BC7SOFTWARELYS A:646 , BMA B:703BINDING SITE FOR RESIDUE MAN B 705
17BC8SOFTWARESER B:276 , HIS B:306 , TYR B:311 , ARG B:315 , HOH B:828BINDING SITE FOR RESIDUE SO4 B 706
18BC9SOFTWAREPRO B:273 , GLN B:413 , ASN B:416 , HOH B:808BINDING SITE FOR RESIDUE NA B 707
19CC1SOFTWAREHIS B:226 , TYR B:253 , GLN B:356 , GLU B:375 , TYR B:402BINDING SITE FOR RESIDUE SCN B 708
20CC2SOFTWAREASN B:195 , TYR B:196 , ALA B:199 , PRO B:669 , TYR B:670BINDING SITE FOR RESIDUE SCN B 709

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:104 -A:53
2A:175 -A:169

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:634 -Pro A:635
2Phe B:638 -Pro B:639

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L37)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L37)

(-) Exons   (0, 0)

(no "Exon" information available for 4L37)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:674
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh.eeee..eeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............ee.....................ee..hhhhhhhhhhhhhhhhhhhhhhhh.eee....eee...hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh............hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh...eeeeeeee..eeeeeeeeeee.hhhh..hhhhhh.....eeeeeeeeee...eeeeeeee...eeeeeeeeeee.........hhhhhhhhheeeeeeeeee..eeeeeeee.hhh..ee....hhhhhhhhhh..eeehhhhhh...ee.hhh........eeeeeeeeeee.............................hhhhhhh..eeeeeeeeee....hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l37 A   6 FKTTPVDAAFVEKQKKILSLFYNVNEISYEAEYYKVAQDFNIEASKDCYTNMKAYENFMMMYKVGFLPKNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQGMFLYAYYIAIIQRSDTASFVLPAPYEAYPQYFVNMEVKNKMDYVKMMDGCLDEKICYNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTEDVGLNAYYYYFHSHLPFWWNSGKYGAFKERRGEIYFFFYQQLLARYYMERLTNGLGKIPEFSWYSPLRTGYLPPFNSFYYPFAQRSNDYELHTEKNYEEIRFLDIYEKTFFQYLQQGHFKAFDKKIDLHSSKAVNFVGNYWQTNADLFEEDFLQFYQRSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPAFYQLYKRIVQYIIEFKQYQVPYTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLNHKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKAVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYLFNIPHYTPDKAQ 679
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675    


Chain B from PDB  Type:PROTEIN  Length:667
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhh........hhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhh.eeee..eeeee..hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............ee........ee..ee.......ee..hhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeee..hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.............hhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh.....eeeeee..eeeeeeeeeee.hhhh..hhhhhhh....eeeeeeeeeee...eeeeeeee...eeeeeeeeeee.........hhhhhhhhheeeeeeeeee..eeeeeeee......ee....hhhhhhhhhhh.eeehhhhh....ee.hhh........eeeeeeeeeee........hhhhhhhhh............hhhhhh...eeeeeeeeee....hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l37 B   9 IKTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQGQFLYAFYIAVIQRSDCHGFVVPAPYEVYPKMFMNMEVLQKIYVTKMQDGLINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEEQRLTYFTEDIGMNAYYYYFHSHLPFWWTSEKYGALKERRGEVYFYFYQQLLARYYFERLTNGLGKIPEFSWYSPIKTGYYPLMLTKFTPFAQRPDYYNLHTEENYERVRFLDTYEKTFVQFLQKDHFEAFGQKIDFHDPKAINFVGNYWQDNADLYGEEVTKDYQRSYEVFARRVLGAAPMPFDKYTFMPSAMDFYQTSLRDPAFYQLYNRIVEYIVEFKQYLKPYTQDKLYFDGVKITDVKVDKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVVKIFLAPKYDDNGIPLTLEDNWMKFFELDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMSEEFCYMPKRLMLPRGTEGGFPFQLFVFVYPFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIYHEGERFPYKFNIP 675
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L37)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L37)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L37)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4L37)

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  4l37
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  H9JHM9_BOMMO | H9JHM9
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  Q1HPP4_BOMMO | Q1HPP4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        H9JHM9_BOMMO | H9JHM9: 3wjm
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(-) Related Entries Specified in the PDB File

3gwj ANTHERAEA PERNYI ARYLPHORIN