4L1F - JenaLib

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Title :   ELECTRON TRANSFERRING FLAVOPROTEIN OF ACIDAMINOCOCCUS FERMENTANS: TOWARDS A MECHANISM OF FLAVIN-BASED ELECTRON BIFURCATION

Authors :   A. M. Mowafy, N. P. Chowdhury, J. Demmer, V. Upadhyay, S. Kolzer, E. Jaya J. Kahnt, U. Demmer, U. Ermler, W. Buckel

Date :   03 Jun 13 (Deposition) - 15 Jan 14 (Release) - 12 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.79

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: A,B  (1x)

Keywords :   Fad, Butyryl-Coa Dehydrogenase, Electron Transferring Flavoprotein (Etf), Nadh, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. P. Chowdhury, A. M. Mowafy, J. K. Demmer, V. Upadhyay, S. Koelzer, E. Jayamani, J. Kahnt, M. Hornung, U. Demmer, U. Ermler, W. Buckel
Studies On The Mechanism Of Electron Bifurcation Catalyzed By Electron Transferring Flavoprotein (Etf) And Butyryl-Coa Dehydrogenase (Bcd) Of Acidaminococcus Fermentans.
J. Biol. Chem. V. 289 5145 2014
PubMed-ID: 24379410 | Reference-DOI: 10.1074/JBC.M113.521013

Molecule 1 - ACYL-COA DEHYDROGENASE DOMAIN PROTEIN
	Chains	:	A, B
	Organism Scientific	:	ACIDAMINOCOCCUS FERMENTANS
	Organism Taxid	:	591001
	Strain	:	DSM 20731

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 9)

No.	Name	Count	Type	Full Name
1	COS	2	Ligand/Ion	COENZYME A PERSULFIDE
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	NA	3	Ligand/Ion	SODIUM ION
4	PDO	1	Ligand/Ion	1,3-PROPANDIOL
5	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (4, 12)

No.	Name	Count	Type	Full Name
1	COS	4	Ligand/Ion	COENZYME A PERSULFIDE
2	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	NA	-1	Ligand/Ion	SODIUM ION
4	PDO	2	Ligand/Ion	1,3-PROPANDIOL
5	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (4, 6)

No.	Name	Count	Type	Full Name
1	COS	2	Ligand/Ion	COENZYME A PERSULFIDE
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	NA	-1	Ligand/Ion	SODIUM ION
4	PDO	1	Ligand/Ion	1,3-PROPANDIOL
5	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:123 , LEU A:125 , THR A:126 , GLY A:131 , THR A:132 , PHE A:156 , ILE A:157 , THR A:158 , ILE A:358 , TYR A:362 , THR A:365 , GLN A:367 , COS A:402 , HOH A:501 , HOH A:509 , HOH A:514 , ARG B:268 , GLN B:270 , PHE B:271 , ILE B:275 , PHE B:278 , GLN B:279 , LEU B:281 , GLN B:336 , ILE B:337 , GLY B:340 , TYR B:341 , HOH B:582 , HOH B:800	BINDING SITE FOR RESIDUE FAD A 401
2	AC2	SOFTWARE	THR A:132 , HIS A:179 , PHE A:232 , MET A:236 , GLU A:237 , LEU A:239 , ASP A:240 , ARG A:243 , GLU A:363 , GLY A:364 , ARG A:375 , FAD A:401 , NA A:403 , HOH A:550 , HOH A:579 , HOH A:661 , HOH A:669 , HOH A:800	BINDING SITE FOR RESIDUE COS A 402
3	AC3	SOFTWARE	THR A:126 , GLY A:131 , COS A:402	BINDING SITE FOR RESIDUE NA A 403
4	AC4	SOFTWARE	LEU A:5 , GLN A:10	BINDING SITE FOR RESIDUE PDO A 404
5	AC5	SOFTWARE	TYR A:347 , PRO A:348 , GLU A:350 , ARG A:351	BINDING SITE FOR RESIDUE NA A 405
6	AC6	SOFTWARE	ARG A:268 , GLN A:270 , PHE A:271 , ILE A:275 , PHE A:278 , GLN A:279 , LEU A:281 , GLN A:336 , ILE A:337 , GLY A:340 , TYR A:341 , HOH A:519 , PHE B:123 , LEU B:125 , THR B:126 , GLY B:131 , THR B:132 , PHE B:156 , ILE B:157 , THR B:158 , ILE B:358 , TYR B:362 , THR B:365 , GLN B:367 , COS B:402 , HOH B:503 , HOH B:508 , HOH B:671 , HOH B:799	BINDING SITE FOR RESIDUE FAD B 401
7	AC7	SOFTWARE	THR B:132 , HIS B:179 , PHE B:232 , MET B:236 , LEU B:239 , ASP B:240 , ARG B:243 , SER B:313 , GLU B:363 , GLY B:364 , VAL B:368 , ARG B:375 , FAD B:401 , HOH B:529 , HOH B:538 , HOH B:553 , HOH B:625 , HOH B:645 , HOH B:728	BINDING SITE FOR RESIDUE COS B 402
8	AC8	SOFTWARE	LYS B:291 , PHE B:322 , GLU B:329	BINDING SITE FOR RESIDUE PO4 B 403
9	AC9	SOFTWARE	HIS A:301 , HOH A:811	BINDING SITE FOR RESIDUE NA B 404

(no "SS Bond" information available for 4L1F)

(no "Cis Peptide Bond" information available for 4L1F)

(no "SAP(SNP)/Variant" information available for 4L1F)

(no "PROSITE Motif" information available for 4L1F)

(no "Exon" information available for 4L1F)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:380
                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4l1fa1 A:1-228 automated matches                                                                                                                                                                                                   d4l1fa2 A:229-380 automated matches                                                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee...............eeeee..eeeeeeeeeeee......eeeeeee.hhhhhhh.eeeeeee.....eeeeee..........eeeeeeeeeeee...ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l1f A   1 MDFNLTEDQQMIKDMAAEFAEKFLAPTVEERDKAHIWDRKLIDKMGEAGFCGICFPEEYGGMGLDVLSYILAVEELSKVDDGTGITLSANVSLCATPIYMFGTEEQKQKYLAPIAEGTHVGAFGLTEPSAGTDASAQQTTAVLKGDKYILNGSKIFITNGKEADTYVVFAMTDKSQGVHGISAFILEKGMPGFRFGKIEDKMGGHTSITAELIFEDCEVPKENLLGKEGEGFKIAMETLDGGRIGVAAQALGIAEGALAAAVKYSKEREQFGRSISKFQALQFMMADMATKIEAARYLVYHAAMLKNEGKPYSEAAAMAKCFASDVAMEVTTDAVQIFGGYGYTVDYPAERYMRNAKITQIYEGTNQVMRIVTSRALLRD 380
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Chain B from PDB  Type:PROTEIN  Length:380
                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4l1fb1 B:1-228 automated matches                                                                                                                                                                                                   d4l1fb2 B:229-380 automated matches                                                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee...............eeeee..eeeeeeeeeeee......eeeeeee.hhhhhhh.eeeeeee.....eeeeee..........eeeeeeeeeeee...ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l1f B   1 MDFNLTEDQQMIKDMAAEFAEKFLAPTVEERDKAHIWDRKLIDKMGEAGFCGICFPEEYGGMGLDVLSYILAVEELSKVDDGTGITLSANVSLCATPIYMFGTEEQKQKYLAPIAEGTHVGAFGLTEPSAGTDASAQQTTAVLKGDKYILNGSKIFITNGKEADTYVVFAMTDKSQGVHGISAFILEKGMPGFRFGKIEDKMGGHTSITAELIFEDCEVPKENLLGKEGEGFKIAMETLDGGRIGVAAQALGIAEGALAAAVKYSKEREQFGRSISKFQALQFMMADMATKIEAARYLVYHAAMLKNEGKPYSEAAAMAKCFASDVAMEVTTDAVQIFGGYGYTVDYPAERYMRNAKITQIYEGTNQVMRIVTSRALLRD 380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 4L1F)

(no "Pfam Domain" information available for 4L1F)

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Description

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Ligands, Modified Residues, Ions (5, 9)

Sites (9, 9)

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