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4L1F
Biol. Unit 1
Info
Asym.Unit (140 KB)
Biol.Unit 1 (265 KB)
Biol.Unit 2 (134 KB)
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(1)
Title
:
ELECTRON TRANSFERRING FLAVOPROTEIN OF ACIDAMINOCOCCUS FERMENTANS: TOWARDS A MECHANISM OF FLAVIN-BASED ELECTRON BIFURCATION
Authors
:
A. M. Mowafy, N. P. Chowdhury, J. Demmer, V. Upadhyay, S. Kolzer, E. Jaya J. Kahnt, U. Demmer, U. Ermler, W. Buckel
Date
:
03 Jun 13 (Deposition) - 15 Jan 14 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.79
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (1x)
Keywords
:
Fad, Butyryl-Coa Dehydrogenase, Electron Transferring Flavoprotein (Etf), Nadh, Electron Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
N. P. Chowdhury, A. M. Mowafy, J. K. Demmer, V. Upadhyay, S. Koelzer, E. Jayamani, J. Kahnt, M. Hornung, U. Demmer, U. Ermler, W. Buckel
Studies On The Mechanism Of Electron Bifurcation Catalyzed By Electron Transferring Flavoprotein (Etf) And Butyryl-Coa Dehydrogenase (Bcd) Of Acidaminococcus Fermentans.
J. Biol. Chem. V. 289 5145 2014
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: COENZYME A PERSULFIDE (COSa)
1b: COENZYME A PERSULFIDE (COSb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
4a: 1,3-PROPANDIOL (PDOa)
5a: PHOSPHATE ION (PO4a)
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Label:
No.
Name
Count
Type
Full Name
1
COS
4
Ligand/Ion
COENZYME A PERSULFIDE
2
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
NA
-1
Ligand/Ion
SODIUM ION
4
PDO
2
Ligand/Ion
1,3-PROPANDIOL
5
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:123 , LEU A:125 , THR A:126 , GLY A:131 , THR A:132 , PHE A:156 , ILE A:157 , THR A:158 , ILE A:358 , TYR A:362 , THR A:365 , GLN A:367 , COS A:402 , HOH A:501 , HOH A:509 , HOH A:514 , ARG B:268 , GLN B:270 , PHE B:271 , ILE B:275 , PHE B:278 , GLN B:279 , LEU B:281 , GLN B:336 , ILE B:337 , GLY B:340 , TYR B:341 , HOH B:582 , HOH B:800
BINDING SITE FOR RESIDUE FAD A 401
2
AC2
SOFTWARE
THR A:132 , HIS A:179 , PHE A:232 , MET A:236 , GLU A:237 , LEU A:239 , ASP A:240 , ARG A:243 , GLU A:363 , GLY A:364 , ARG A:375 , FAD A:401 , NA A:403 , HOH A:550 , HOH A:579 , HOH A:661 , HOH A:669 , HOH A:800
BINDING SITE FOR RESIDUE COS A 402
3
AC3
SOFTWARE
THR A:126 , GLY A:131 , COS A:402
BINDING SITE FOR RESIDUE NA A 403
4
AC4
SOFTWARE
LEU A:5 , GLN A:10
BINDING SITE FOR RESIDUE PDO A 404
5
AC5
SOFTWARE
TYR A:347 , PRO A:348 , GLU A:350 , ARG A:351
BINDING SITE FOR RESIDUE NA A 405
6
AC6
SOFTWARE
ARG A:268 , GLN A:270 , PHE A:271 , ILE A:275 , PHE A:278 , GLN A:279 , LEU A:281 , GLN A:336 , ILE A:337 , GLY A:340 , TYR A:341 , HOH A:519 , PHE B:123 , LEU B:125 , THR B:126 , GLY B:131 , THR B:132 , PHE B:156 , ILE B:157 , THR B:158 , ILE B:358 , TYR B:362 , THR B:365 , GLN B:367 , COS B:402 , HOH B:503 , HOH B:508 , HOH B:671 , HOH B:799
BINDING SITE FOR RESIDUE FAD B 401
7
AC7
SOFTWARE
THR B:132 , HIS B:179 , PHE B:232 , MET B:236 , LEU B:239 , ASP B:240 , ARG B:243 , SER B:313 , GLU B:363 , GLY B:364 , VAL B:368 , ARG B:375 , FAD B:401 , HOH B:529 , HOH B:538 , HOH B:553 , HOH B:625 , HOH B:645 , HOH B:728
BINDING SITE FOR RESIDUE COS B 402
8
AC8
SOFTWARE
LYS B:291 , PHE B:322 , GLU B:329
BINDING SITE FOR RESIDUE PO4 B 403
9
AC9
SOFTWARE
HIS A:301 , HOH A:811
BINDING SITE FOR RESIDUE NA B 404
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4l1fa2 (A:229-380)
1b: SCOP_d4l1fb2 (B:229-380)
2a: SCOP_d4l1fa1 (A:1-228)
2b: SCOP_d4l1fb1 (B:1-228)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Acidaminococcus fermentans [TaxId: 591001]
(1)
1a
d4l1fa2
A:229-380
1b
d4l1fb2
B:229-380
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Acidaminococcus fermentans [TaxId: 591001]
(1)
2a
d4l1fa1
A:1-228
2b
d4l1fb1
B:1-228
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (140 KB)
Header - Asym.Unit
Biol.Unit 1 (265 KB)
Header - Biol.Unit 1
Biol.Unit 2 (134 KB)
Header - Biol.Unit 2
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