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(-) Description

Title :  CRYSTAL STRUCTURE OF PHI29 PRNA 3WJ CORE
 
Authors :  H. Zhang, J. A. Endrizzi, Y. Shu, F. Haque, C. Sauter, P. Guo, Y. -I. Chi
Date :  29 May 13  (Deposition) - 16 Oct 13  (Release) - 16 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Phi29 Dna Packaging Motor Prna Core Element, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Zhang, J. A. Endrizzi, Y. Shu, F. Haque, C. Sauter, L. S. Shlyakhtenko, Y. Lyubchenko, P. Guo, Y. I. Chi
Crystal Structure Of 3Wj Core Revealing Divalent Ion-Promoted Thermostability And Assembly Of The Phi29 Hexameric Motor Prna.
Rna V. 19 1226 2013
PubMed-ID: 23884902  |  Reference-DOI: 10.1261/RNA.037077.112

(-) Compounds

Molecule 1 - PHI29 PRNA 3WJ CORE RNA 18 MER
    Chains: A
    Engineered: YES
    Other Details: CHEMICALLY SYNTHESIZED
    Synthetic: YES
 
Molecule 2 - PHI29 PRNA 3WJ CORE RNA 20 MER
    Chains: B
    Engineered: YES
    Other Details: CHEMICALLY SYNTHESIZED
    Synthetic: YES
 
Molecule 3 - PHI29 PRNA 3WJ CORE RNA 16 MER
    Chains: C
    Engineered: YES
    Other Details: CHEMICALLY SYNTHESIZED
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1MN3Ligand/IonMANGANESE (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:3 , C B:19 , A C:7BINDING SITE FOR RESIDUE MN A 101
2AC2SOFTWAREC B:20BINDING SITE FOR RESIDUE MN B 101
3AC3SOFTWAREC A:4 , G A:18 , C B:20 , A C:6BINDING SITE FOR RESIDUE MN C 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KZ2)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:RNA  Length:18
                                                 
                  4kz2 A  1 UUGCCAUGUGUAUGUGGG 18
                                    10        


Chain B from PDB  Type:RNA  Length:20
                                                   
                  4kz2 B  1 CCCACAUACUUUGUUGAUCC 20
                                    10        20


Chain C from PDB  Type:RNA  Length:16
                                               
                  4kz2 C  1 GGAUCAAUCAUGGCAA 16
                                    10
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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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