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(-) Description

Title :  CRYSTAL STRUCTURE OF WHY3 FROM ARABIDOPSIS THALIANA
 
Authors :  L. Cappadocia, J. S. Parent, N. Brisson, J. Sygusch
Date :  12 May 13  (Deposition) - 13 Nov 13  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Plant, Whirly, Single-Stranded Dna Binding Protein, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Cappadocia, J. S. Parent, J. Sygusch, N. Brisson
A Family Portrait: Structural Comparison Of The Whirly Proteins From Arabidopsis Thaliana And Solanum Tuberosum.
Acta Crystallogr. , Sect. F V. 69 1207 2013
PubMed-ID: 24192350  |  Reference-DOI: 10.1107/S1744309113028698

(-) Compounds

Molecule 1 - SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 78-246
    Gene: AT2G02740, PTAC11, T20F6.12, WHY3
    Organism Common: MOUSE-EAR CRESS,THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Strain: COL-0
    Synonym: PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 11, PROTEIN WHIRLY 3, ATWHY3

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1PO48Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:143 , PHE A:144 , SER A:145 , HIS A:167 , LYS A:181BINDING SITE FOR RESIDUE PO4 A 301
2AC2SOFTWARELYS A:93 , GLY A:94 , GLY A:132 , VAL A:133 , ARG A:134 , GLN A:135 , TYR A:136BINDING SITE FOR RESIDUE PO4 A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KOQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KOQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains d4koqa_ A: automated matches                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee...eeeeeeee..eeee.....eeeee..eeeeeeeeeee..ee.hhhheeeeehhhhhhhhhh......eeeee...........eeeeeeeee.....eeeeeeeeee....eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4koq A  82 SPRFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGWSAFANSIKAAALE 250
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KOQ)

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(-) Gene Ontology  (12, 12)

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4koo 4kop