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(-) Description

Title :  STRUCTURAL BASIS FOR ACTIVATION OF ZAP-70 BY PHOSPHORYLATION OF THE SH2-KINASE LINKER
 
Authors :  Q. Yan, T. Barros, P. R. Visperas, S. Deindl, T. A. Kadlecek, A. Weiss, J.
Date :  09 Apr 13  (Deposition) - 08 May 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase Domain, Sh2 Domain, Transferase, Atp Binding, Cytoplam (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Yan, T. Barros, P. R. Visperas, S. Deindl, T. A. Kadlecek, A. Weiss, J. Kuriyan
Structural Basis For Activation Of Zap-70 By Phosphorylatio Of The Sh2-Kinase Linker.
Mol. Cell. Biol. V. 33 2188 2013
PubMed-ID: 23530057  |  Reference-DOI: 10.1128/MCB.01637-12

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE ZAP-70
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Gene: ZAP70, SRK
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 70 KDA ZETA-CHAIN ASSOCIATED PROTEIN, SYK-RELATED TYROSINE KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG1Ligand/IonMAGNESIUM ION
3PO41Ligand/IonPHOSPHATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:465 , ASN A:466 , ASP A:479 , ANP A:702BINDING SITE FOR RESIDUE MG A 701
2AC2SOFTWARELEU A:344 , GLY A:347 , PHE A:349 , VAL A:352 , ALA A:367 , LYS A:369 , GLU A:415 , ALA A:417 , PRO A:421 , ARG A:465 , ASN A:466 , LEU A:468 , ASP A:479 , MG A:701BINDING SITE FOR RESIDUE ANP A 702
3AC3SOFTWAREARG A:170 , ARG A:190 , ARG A:192 , ALA A:199BINDING SITE FOR RESIDUE PO4 A 703

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K2R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4K2R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K2R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K2R)

(-) Exons   (0, 0)

(no "Exon" information available for 4K2R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:551
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhh.....eeeeee.......eeeeeee..eeeeeeeee.....eee.......hhhhhhhhhhhh.........ee...........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh......eeeee......eeeeeee..eeeeeeeee.....ee.....ee.hhhhhhhhhh......................hhhhh....hhhhhhhhhhh.....hhh.eeeeeeeeee...eeeeeeeee....eeeeeeeee.......hhhhhhhhhhhhh.........eeeeee...eeeeee.....hhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee..eeee............hhhhhhhh..hhhhhhhhhhhhhhhhhh..........hhhhhhhhhh..........hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k2r A   2 PDPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKADGLIYCLKEACPNSDKPRPMPMDTSVYESPYSDPEELKDKKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGGSGLEVLF 614
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251     ||306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476      |503       513       523       533       543       553       563       573       583       593       603       613 
                                                                                                                                                                                                                                                                                         257|                                                                                                                                                                                 483|                                                                                                                 
                                                                                                                                                                                                                                                                                          303                                                                                                                                                                                  501
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K2R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K2R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K2R)

(-) Gene Ontology  (52, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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  4k2r
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  ZAP70_HUMAN | P43403
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ZAP70_HUMAN | P43403: 1fbv 1m61 1u59 2cbl 2oq1 2ozo 2y1n 3zni 4a4b 4a4c 4xz0 4xz1

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4K2R)