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(-) Description

Title :  CRYSTAL STRUCTURES OF DROSOPHILA CRYPTOCHROME
 
Authors :  A. Czarna, E. Wolf
Date :  03 Apr 13  (Deposition) - 26 Jun 13  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cryptochrome, Rossmann Fold, Photoreceptor, Fad, Circadian Clock Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Czarna, A. Berndt, H. R. Singh, A. Grudziecki, A. G. Ladurner, G. Timinszky, A. Kramer, E. Wolf
Structures Of Drosophila Cryptochrome And Mouse Cryptochrome1 Provide Insight Into Circadian Function.
Cell(Cambridge, Mass. ) V. 153 1394 2013
PubMed-ID: 23746849  |  Reference-DOI: 10.1016/J.CELL.2013.05.011

(-) Compounds

Molecule 1 - CRYPTOCHROME-1
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: CRY, CG3772
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: DMCRY1, DCRY, BLUE LIGHT PHOTORECEPTOR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2NA1Ligand/IonSODIUM ION
3NH42Ligand/IonAMMONIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:237 , SER A:265 , SER A:267 , LEU A:270 , GLN A:311 , TRP A:314 , ARG A:315 , PHE A:318 , TRP A:375 , LEU A:376 , HIS A:378 , ARG A:381 , ASN A:382 , PHE A:404 , ASP A:410 , ALA A:411 , ASP A:412 , VAL A:415 , CYS A:416 , ASN A:419 , TRP A:420 , PHE A:534 , HOH A:757 , HOH A:780 , HOH A:800 , HOH A:802 , HOH A:803 , HOH A:841 , HOH A:843BINDING SITE FOR RESIDUE FAD A 601
2AC2SOFTWARETYR A:54 , GLU A:206BINDING SITE FOR RESIDUE NH4 A 602
3AC3SOFTWAREARG B:237 , SER B:265 , SER B:267 , LEU B:270 , GLN B:311 , TRP B:314 , ARG B:315 , TRP B:375 , HIS B:378 , ARG B:381 , ASN B:382 , PHE B:404 , ASP B:410 , ALA B:411 , ASP B:412 , VAL B:415 , CYS B:416 , ASN B:419 , NA B:602 , HOH B:724 , HOH B:805 , HOH B:806 , HOH B:807 , HOH B:809 , HOH B:851BINDING SITE FOR RESIDUE FAD B 601
4AC4SOFTWARESER B:267 , LEU B:270 , FAD B:601 , HOH B:803BINDING SITE FOR RESIDUE NA B 602
5AC5SOFTWAREASP B:19 , SER B:137 , SER B:276 , VAL B:277 , ARG B:278BINDING SITE FOR RESIDUE NH4 B 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JZY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JZY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JZY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JZY)

(-) Exons   (0, 0)

(no "Exon" information available for 4JZY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:534
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee........hhhhhhhhhhhhhh.eeeeeeee..........hhhhhhhhhhhhhhhhhhhhhh.......eeee.hhhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhh......hhhhhhhhhhhhh...................hhhhhhhh.......hhhhhh...ee..ee.......hhhhhhhhhhhhhhhhhhhhhh..................hhhhhhh...hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jzy A   2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLADV 540
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291 ||    306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536    
                                                                                                                                                                                                                                                                                                                             293|                                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                              299                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:536
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeeeee........hhhhhhhhhhhhhh.eeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhh......hhhhhhhhhhhhh...................hhhhhhhh.......hhhhhh...ee..ee.......hhhhhhhhhhhhhhhhhhhhhh...hhhhh..........hhhhhhh...hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jzy B   0 AMATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLADV 540
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289   ||  304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534      
                                                                                                                                                                                                                                                                                                                               293|                                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                299
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JZY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JZY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JZY)

(-) Gene Ontology  (36, 36)

Asymmetric/Biological Unit(hide GO term definitions)

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  4jzy
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  CRY1_DROME | O77059
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CRY1_DROME | O77059: 4gu5 4k03

(-) Related Entries Specified in the PDB File

4k03 DROSOPHILA CRYPTOCHROME
4k0r MOUSE CRYPTOCHROME1.