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(-) Description

Title :  STRUCTURE OF FULL-LENGTH DROSOPHILA CRYPTOCHROME
 
Authors :  B. D. Zoltowski, A. T. Vaidya, D. Top, J. Widom, M. W. Young, C. Levy, A. R. N. S. Scrutton, D. Leys, B. R. Crane
Date :  29 Aug 12  (Deposition) - 26 Sep 12  (Release) - 03 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Photolyase, Circadian Clock Light Entrainment, Gene Regulation, Protein Degradation, Timeless, Jetlag, Phosphorylation, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Levy, B. D. Zoltowski, A. R. Jones, A. T. Vaidya, D. Top, J. Widom, M. W. Young, N. S. Scrutton, B. R. Crane, D. Leys
Updated Structure Of Drosophila Cryptochrome.
Nature V. 495 E3 2013
PubMed-ID: 23518567  |  Reference-DOI: 10.1038/NATURE11995
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CRYPTOCHROME-1
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PFASTBAC-HTA
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: PLASMID
    Gene: CG3772, CRY
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: DMCRY1, DCRY, BLUE LIGHT PHOTORECEPTOR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:265 , MET A:266 , FAD A:602BINDING SITE FOR RESIDUE MG A 601
2AC2SOFTWAREARG A:237 , SER A:265 , SER A:267 , LEU A:270 , GLN A:311 , TRP A:314 , ARG A:315 , PHE A:318 , TRP A:375 , HIS A:378 , ARG A:381 , ASN A:382 , ASP A:410 , ALA A:411 , ASP A:412 , VAL A:415 , CYS A:416 , ASN A:419 , MG A:601 , HOH A:704 , HOH A:715 , HOH A:763 , HOH A:791 , HOH A:834 , HOH A:836BINDING SITE FOR RESIDUE FAD A 602
3AC3SOFTWARESER B:265 , MET B:266 , FAD B:602 , HOH B:775BINDING SITE FOR RESIDUE MG B 601
4AC4SOFTWAREARG B:237 , SER B:265 , SER B:267 , LEU B:270 , GLN B:311 , TRP B:314 , ARG B:315 , PHE B:318 , TRP B:375 , HIS B:378 , ARG B:381 , ASN B:382 , ASP B:410 , ALA B:411 , ASP B:412 , VAL B:415 , CYS B:416 , ASN B:419 , MG B:601 , HOH B:725 , HOH B:732 , HOH B:777 , HOH B:790 , HOH B:800 , HOH B:804 , HOH B:812BINDING SITE FOR RESIDUE FAD B 602

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:296 -B:296

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GU5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GU5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GU5)

(-) Exons   (0, 0)

(no "Exon" information available for 4GU5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:537
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee........hhhhhhhhhhhhhh.eeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhh......hhhhhhhhhhhhh...................hhhhhhhh.......hhhhhh................hhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhh...hhhhhhhhhhhhhh......ee..ee...hhhhhhhhhhhhhhhhhhh......................hhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gu5 A   3 TRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLAD 539
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       


Chain B from PDB  Type:PROTEIN  Length:538
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee........hhhhhhhhhhhhhh.eeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhh......hhhhhhhhhhhhh...................hhhhhhhh.......hhhhhh................hhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.........hhhhhhh...hhhhhhhhhhhhhh......ee..ee...hhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gu5 B   2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLAD 539
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GU5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GU5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GU5)

(-) Gene Ontology  (36, 36)

Asymmetric Unit(hide GO term definitions)

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        CRY1_DROME | O77059: 4jzy 4k03

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