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(-) Description

Title :  HIGH RESOLUTION STRUCTURE OF A C-TERMINAL FRAGMENT OF THE T4 PHAGE GP5 BETA-HELIX
 
Authors :  S. A. Buth, P. G. Leiman, S. P. Boudko
Date :  07 Mar 13  (Deposition) - 12 Mar 14  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.28
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Paar-Binding, Triple Beta-Helix, Intertwined Beta-Helix, Cell- Puncturing Device, T4 Gp5. 4, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. A. Buth, S. P. Boudko, J. Engel, M. G. Rossmann, P. G. Leiman
Structure And Biophysical Properties Of Phage T4 Gp5 Beta-Helix
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TAIL-ASSOCIATED LYSOZYME
    Chains: A, B, C
    EC Number: 3.2.1.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHISTRX2, PET-32A DERIVATIVE
    Expression System Strain: B834/DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 483-575
    Gene: 5
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Synonym: PROTEIN GP5, GP5*, GP5C

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
1ELA1Ligand/Ion9-OCTADECENOIC ACID
2MG1Ligand/IonMAGNESIUM ION
3PLM1Ligand/IonPALMITIC ACID
4STE1Ligand/IonSTEARIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:711 , HOH A:714 , HOH B:705 , HOH B:712 , HOH C:704 , HOH C:711BINDING SITE FOR RESIDUE MG A 601
2AC2SOFTWAREGLU A:486 , ILE A:512 , ILE B:496 , ILE C:496 , VAL C:502 , ILE C:504BINDING SITE FOR RESIDUE ELA A 602
3AC3SOFTWAREILE A:496 , THR A:520 , ILE B:512 , HOH B:775 , THR C:495 , THR C:520BINDING SITE FOR RESIDUE PLM B 601
4AC4SOFTWAREGLY A:494 , THR A:495 , ILE B:496 , VAL B:502 , GLN B:526 , GLU C:486 , ILE C:512BINDING SITE FOR RESIDUE STE C 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JJ2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JJ2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JJ2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JJ2)

(-) Exons   (0, 0)

(no "Exon" information available for 4JJ2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeee...eeeee...eeeee...eeeee...eeeee...eeeee...eeeee..eeeeee.eeeeee..eeeee..eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 4jj2 A 484 GDETKTVEGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG 575
                                   493       503       513       523       533       543       553       563       573  


Chain B from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeee...eeeee...eeeee...eeeee...eeeee...eeeee...eeeee..eeeeee.eeeeee...eeee..eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 4jj2 B 484 GDETKTVEGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG 575
                                   493       503       513       523       533       543       553       563       573  


Chain C from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeeee...eeeee...eeeee...eeeee...eeeee...eeeee...eeeee..eeeeee.eeeeee..eeeee...eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 4jj2 C 484 GDETKTVEGNGTILVKGNVTIIVEGNADITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDGSRIDIG 575
                                   493       503       513       523       533       543       553       563       573
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JJ2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JJ2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JJ2)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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  BP5_BPT4 | P16009
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BP5_BPT4 | P16009: 1k28 1pdl 1wth 2z6b 3a1m 4jiv 4jiw 4ku0 4osd 5iv5

(-) Related Entries Specified in the PDB File

1k28 FULL-LENGTH T4 PHAGE GP5 PROTEIN IN COMPLEX WITH GP27