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(-) Description

Title :  CRYSTAL STRUCTURE OF CLOSTRIDIUM HISTOLYTICUM COLH COLLAGENASE POLYCYSTIC KIDNEY-DISEASE-LIKE DOMAIN 2B AT 1.4 ANGSTROM RESOLUTION IN THE PRESENCE OF CALCIUM
 
Authors :  R. Bauer, O. Matsushita, J. Sakon
Date :  03 Mar 13  (Deposition) - 05 Mar 14  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.42
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ig-Like Fold, Beta-Sandwich, Calcium Binding Protein, , Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Bauer, K. Janowska, K. Taylor, B. Jordan, S. Gann, T. Janowski, E. Latimer, O. Matsushita, J. Sakon
Structures Of Three Polycystic Kidney Disease-Like Domains From Clostridium Histolyticum Collagenases Colg And Colh
Acta Crystallogr. , Sect. D V. 71 565 2015
PubMed: search  |  Reference-DOI: 10.1107/S1399004714027722

(-) Compounds

Molecule 1 - COLH PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: PKD-LIKE DOMAIN, UNP RESIDUES 806-900
    Gene: COLH
    Organism Scientific: CLOSTRIDIUM HISTOLYTICUM
    Organism Taxid: 1498
    Synonym: COLLAGENASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2SO43Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2SO41Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:774 , LYS A:775 , ASP A:802 , ASP A:804 , ASP A:844 , HOH A:1001BINDING SITE FOR RESIDUE CA A 901
2AC2SOFTWARESER A:818 , HIS A:828 , HOH A:1024 , HOH A:1044 , HOH A:1053 , HOH A:1087BINDING SITE FOR RESIDUE SO4 A 902
3AC3SOFTWARELYS A:852 , HOH A:1051BINDING SITE FOR RESIDUE SO4 A 903
4AC4SOFTWAREASN B:774 , LYS B:775 , ASP B:802 , ASP B:804 , ASP B:844 , HOH B:1001BINDING SITE FOR RESIDUE CA B 901
5AC5SOFTWAREHOH B:1022 , HOH B:1048BINDING SITE FOR RESIDUE SO4 B 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JGU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JGU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JGU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JGU)

(-) Exons   (0, 0)

(no "Exon" information available for 4JGU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh...........eee...eee............eeeeeee.............eee....eeeeeeeeeee....eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4jgu A 766 AEIKDLSENKLPVIYMHVPKSGALNQKVVFYGKGTYDPDGSIAGYQWDFGDGSDFSSEQNPSHVYTKKGEYTVTLRVMDSSGQMSEKTMKIKITD 860
                                   775       785       795       805       815       825       835       845       855     


Chain B from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh...........eee...eee............eeeeeee.............eee....eeeeeeeeeee....eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4jgu B 766 AEIKDLSENKLPVIYMHVPKSGALNQKVVFYGKGTYDPDGSIAGYQWDFGDGSDFSSEQNPSHVYTKKGEYTVTLRVMDSSGQMSEKTMKIKITD 860
                                   775       785       795       805       815       825       835       845       855
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JGU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JGU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JGU)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q46085_HATHI | Q46085: 3jqw 3jqx 4ar1 4arf 4u6t 4u7k

(-) Related Entries Specified in the PDB File

2y72 PKD-LIKE DOMAIN FROM COLG COLLAGENASE AT 1.4 ANGSTROM
3jqu PKD-LIKE DOMAIN FROM COLG COLLAGENASE AT 1.4 ANGSTROM
3jqw CBD FROM COLH COLLAGENASE IN THE PRESENCE OF CALCIUM
3jqx CBD FROM COLH COLLAGENASE IN THE PRESENCE OF CALCIUM AND CADMIUM
3js7 PKD-LIKE DOMAIN FROM COLG COLLAGENASE AT 1.6 ANGSTROM