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(-) Description

Title :  CRYSTAL STRUCTURE OF CLOSTRIDIUM HISTOLYTICUM COLG COLLAGENASE PKD DOMAIN 2 AT 1.6 ANGSTROM RESOLUTION
 
Authors :  J. Sakon, S. T. L. Philominathan, S. Gann, R. Bauer, O. Matsushita
Date :  22 Mar 13  (Deposition) - 21 May 14  (Release) - 01 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ig-Like Fold, Beta-Sandwich, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Bauer, K. Janowska, K. Taylor, B. Jordan, S. Gann, T. Janowski, E. C. Latimer, O. Matsushita, J. Sakon
Structures Of Three Polycystic Kidney Disease-Like Domains From Clostridium Histolyticum Collagenases Colg And Colh.
Acta Crystallogr. , Sect. D V. 71 565 2015
PubMed-ID: 25760606  |  Reference-DOI: 10.1107/S1399004714027722

(-) Compounds

Molecule 1 - COLLAGENASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 797-881
    Gene: COLG
    Organism Scientific: CLOSTRIDIUM HISTOLYTICUM
    Organism Taxid: 1498

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1BR1Ligand/IonBROMIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR B:721 , GLY B:733BINDING SITE FOR RESIDUE BR B 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JRW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JRW)

 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JRW)

(-) Exons   (0, 0)

(no "Exon" information available for 4JRW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.eee...eeeee..........eeeeeee.....eee..eeeee....eeeeeeeeeee....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 4jrw A 685 GSAPIAKVTGPSTGAVGRNIEFSGKDSKDEDGKIVSYDWDFGDGATSRGKNSVHAYKKAGTYNVTLKVTDDKGATATESFTIEIKNE 771
                                   694       704       714       724       734       744       754       764       


Chain B from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.eee...eeeee..........eeeeeee.....eee..eeeee....eeeeeeeeeee....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 4jrw B 685 GSAPIAKVTGPSTGAVGRNIEFSGKDSKDEDGKIVSYDWDFGDGATSRGKNSVHAYKKAGTYNVTLKVTDDKGATATESFTIEIKNE 771
                                   694       704       714       724       734       744       754       764
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JRW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JRW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JRW)

(-) Gene Ontology  (5, 5)

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  4jrw
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9X721_HATHI | Q9X721: 2o8o
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        Q9X721_HATHI | Q9X721: 2y3u 2y50 2y6i 2y72 4aqo 4are 4hpk 4tn9 5iku

(-) Related Entries Specified in the PDB File

2c4x BACTERIAL PKD-LIKE DOMAIN
2y72 PKD-LIKE DOMAIN AT 1.2 ANGSTROM RESOLUTION
3jqu PKD-LIKE DOMAIN AT 1.4 ANGSTROM RESOLUTION
3jqw COLH COLLAGENASE CBD
4hpk COLG COLLAGENASE CBD
4jgu COLH COLLAGENASE PKD-LIKE DOMAIN IN THE PRESENCE OF CALCIUM