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(-) Description

Title :  CRYSTAL STRUCTURE OF THE APO FORM OF THE EVOLVED VARIANT OF THE COMPUTATIONALLY DESIGNED SERINE HYDROLASE, OSH55.4_H1. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR273
 
Authors :  A. P. Kuzin, S. Lew, S. Rajagopalan, J. Seetharaman, S. Tong, J. K. Evere T. B. Acton, D. Baker, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  21 Feb 13  (Deposition) - 20 Mar 13  (Release) - 08 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.41
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium (Nesg), Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Rajagopalan, C. Wang, K. Yu, A. P. Kuzin, F. Richter, S. Lew, A. E. Miklos, M. L. Matthews, J. Seetharaman, M. Su, J. F. Hunt, B. F. Cravatt, D. Baker
Design Of Activated Serine-Containing Catalytic Triads With Atomic-Level Accuracy.
Nat. Chem. Biol. V. 10 386 2014
PubMed-ID: 24705591  |  Reference-DOI: 10.1038/NCHEMBIO.1498

(-) Compounds

Molecule 1 - SERINE HYDROLASE
    Chains: A
    Engineered: YES
    Organism Scientific: ARTIFICIAL GENE
    Organism Taxid: 32630
    Synonym: OSH55.4_H1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
2RB1Ligand/IonRUBIDIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
2RB-1Ligand/IonRUBIDIUM ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CIT2Ligand/IonCITRIC ACID
2RB-1Ligand/IonRUBIDIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:24BINDING SITE FOR RESIDUE RB A 201
2AC2SOFTWARESER A:112 , HIS A:146 , GLY A:147 , THR A:148 , SER A:151 , TYR A:155BINDING SITE FOR RESIDUE CIT A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JCA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JCA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4JCA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhh...eeeeeee........hhhhhhhhhhhhhhhhhhh........eeeee.......eeeeeeee.....hhhhhhhhhhhhhhhhhhh...eeee..hhhhh...hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jca A   3 RIRHVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFTSWGAWVGGLPAEAVHRVMGEEIKKAPDTLEVTGVHGTEKSAEAYRRASLEH 162
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JCA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JCA)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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  4jca
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 Related Entries

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(-) Related Entries Specified in the PDB File

4etj HOMOLOGY IS 96.8% RELATED ID: NESG-OR273 RELATED DB: TARGETTRACK