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(-) Description

Title :  CRYSTAL STRUCTURE OF E6H VARIANT OF DE NOVO DESIGNED SERINE HYDROLASE OSH55, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR185
 
Authors :  A. Kuzin, M. Su, J. Seetharaman, K. Kornhaber, G. Kornhaber, S. Rajagop D. Baker, J. K. Everett, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hun Northeast Structural Genomics Consortium (Nesg)
Date :  24 Apr 12  (Deposition) - 13 Jun 12  (Release) - 14 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Rajagopalan, C. Wang, K. Yu, A. P. Kuzin, F. Richter, S. Lew, A. E. Miklos, M. L. Matthews, J. Seetharaman, M. Su, J. F. Hunt, B. F. Cravatt, D. Baker
Design Of Activated Serine-Containing Catalytic Triads With Atomic-Level Accuracy.
Nat. Chem. Biol. V. 10 386 2014
PubMed-ID: 24705591  |  Reference-DOI: 10.1038/NCHEMBIO.1498

(-) Compounds

Molecule 1 - SERINE HYDROLASE
    Chains: A
    Engineered: YES
    Mutation: YES
    Organism Scientific: ARTIFICIAL GENE
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric Unit (4, 4)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2PE41Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
3PE51Ligand/Ion3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
4PE61Ligand/IonPHOSPHORYL-HEXAETHYLENE GLYCOL
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2PE42Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
3PE52Ligand/Ion3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
4PE62Ligand/IonPHOSPHORYL-HEXAETHYLENE GLYCOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:90BINDING SITE FOR RESIDUE CL A 201
2AC2SOFTWAREARG A:5 , VAL A:7 , GLY A:9 , ASP A:10 , GLU A:13 , PHE A:14 , THR A:107BINDING SITE FOR RESIDUE PE4 A 202
3AC3SOFTWAREGLY A:119 , LEU A:120 , LEU A:126 , ARG A:127 , LEU A:130 , ALA A:158BINDING SITE FOR RESIDUE PE5 A 203
4AC4SOFTWAREHIS A:6 , THR A:111 , ALA A:112 , LEU A:126 , GLY A:144 , VAL A:145 , HIS A:146BINDING SITE FOR RESIDUE PE6 A 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ETJ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1His A:164 -His A:165

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhh...eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh......eeeee.......eeeeeeee.....hhhhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4etj A   2 ARIRHVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVLRVMLEEIKKAPDTLEVTGVHGTEKSAEAARRALLEHHHH 165
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ETJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ETJ)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

3v45 99.4% IDENTITY RELATED ID: NESG-OR185 RELATED DB: TARGETTRACK