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(-) Description

Title :  HFQ FROM PSEUDOMONAS AERUGINOSA CRYSTALLIZED IN GTP PRESENCE
 
Authors :  A. D. Nikulin, V. Murina, N. Lekontseva
Date :  12 Feb 13  (Deposition) - 31 Jul 13  (Release) - 21 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Lsm, Rna Binding Protein, Rna Chaperone, Srna, Mrna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Murina, N. Lekontseva, A. Nikulin
Hfq Binds Ribonucleotides In Three Different Rna-Binding Sites.
Acta Crystallogr. , Sect. D V. 69 1504 2013
PubMed-ID: 23897473  |  Reference-DOI: 10.1107/S090744491301010X

(-) Compounds

Molecule 1 - PROTEIN HFQ
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HFQ, PA4944
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric/Biological Unit (1, 12)
No.NameCountTypeFull Name
1CD12Ligand/IonCADMIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:57 , HOH A:210 , HOH A:213 , HOH B:208 , HOH B:213BINDING SITE FOR RESIDUE CD A 101
02AC2SOFTWAREASP A:9 , HOH A:208BINDING SITE FOR RESIDUE CD A 102
03AC3SOFTWAREHIS B:57 , HOH B:207 , HOH B:215 , HOH C:204 , HOH C:210BINDING SITE FOR RESIDUE CD B 101
04AC4SOFTWAREHIS B:5 , ASP B:9 , HOH B:217BINDING SITE FOR RESIDUE CD B 102
05AC5SOFTWAREHIS C:57 , HOH C:201 , HOH C:211 , HOH D:211 , HOH D:212BINDING SITE FOR RESIDUE CD C 101
06AC6SOFTWAREHIS C:5 , ASP C:9 , HOH C:212 , HOH C:214BINDING SITE FOR RESIDUE CD C 102
07AC7SOFTWAREHIS D:57 , HOH D:201 , HOH D:216 , HOH D:217 , HOH E:209BINDING SITE FOR RESIDUE CD D 101
08AC8SOFTWAREASP D:9 , HOH D:215BINDING SITE FOR RESIDUE CD D 102
09AC9SOFTWAREHIS E:57 , HOH E:211 , HOH F:208 , HOH F:209BINDING SITE FOR RESIDUE CD E 101
10BC1SOFTWAREHIS E:5 , ASP E:9 , HOH E:205 , HOH E:215BINDING SITE FOR RESIDUE CD E 102
11BC2SOFTWAREHOH A:211 , HOH A:214 , HIS F:57 , HOH F:201 , HOH F:219BINDING SITE FOR RESIDUE CD F 101
12BC3SOFTWAREHIS F:5 , ASP F:9 , HOH F:211BINDING SITE FOR RESIDUE CD F 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J6Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4J6Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J6Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J6Y)

(-) Exons   (0, 0)

(no "Exon" information available for 4J6Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:66
                                                                                                 
               SCOP domains d4j6ya_ A: Pleiotropic translational regulator Hfq                 SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..eeeeee....eeeeeeeee...eeeee....eeee...eeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  4j6y A  6 SLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP 71
                                    15        25        35        45        55        65      


Chain B from PDB  Type:PROTEIN  Length:66
                                                                                                 
               SCOP domains d4j6yb_ B: Pleiotropic translational regulator Hfq                 SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh...eeeee....eeeeeeeee...eeeee....eeee...eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  4j6y B  5 HSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL 70
                                    14        24        34        44        54        64      


Chain C from PDB  Type:PROTEIN  Length:67
                                                                                                  
               SCOP domains d4j6yc_ C: Pleiotropic translational regulator Hfq                  SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh...eeeee....eeeeeeeee...eeeee....eeee...eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  4j6y C  4 GHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL 70
                                    13        23        33        43        53        63       


Chain D from PDB  Type:PROTEIN  Length:66
                                                                                                 
               SCOP domains d4j6yd_ D: Pleiotropic translational regulator Hfq                 SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...eeeee....eeeeeeeee...eeeee....eeee...eeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  4j6y D  6 SLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP 71
                                    15        25        35        45        55        65      


Chain E from PDB  Type:PROTEIN  Length:67
                                                                                                  
               SCOP domains d4j6ye_ E: Pleiotropic translational regulator Hfq                  SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh...eeeee....eeeeeeeee...eeeee...eeeee...eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  4j6y E  4 GHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL 70
                                    13        23        33        43        53        63       


Chain F from PDB  Type:PROTEIN  Length:67
                                                                                                  
               SCOP domains d4j6yf_ F: Pleiotropic translational regulator Hfq                  SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..eeeee....eeeeeeeee...eeeee....eeee...eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  4j6y F  4 GHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL 70
                                    13        23        33        43        53        63
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J6Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J6Y)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HFQ_PSEAE | Q9HUM0: 1u1s 1u1t 3inz 3m4g 3qui 4j5y 4j6w 4j6x 4mmk 4mml

(-) Related Entries Specified in the PDB File

1u1s WILD-TYPE PROTEIN
1u1t WILD-TYPE PROTEIN
4j5y HFQ FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH ATP
4j6w HFQ FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH CTP
4j6x HFQ FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH UTP