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(-) Description

Title :  CRYSTAL STRUCTURE OF A COVALENTLY BOUND ALPHA-KETOHETEROCYCLE INHIBITOR (PHENHEXYL/OXADIAZOLE/PYRIDINE) TO A HUMANIZED VARIANT OF FATTY ACID AMIDE HYDROLASE
 
Authors :  K. Otrubova, M. Brown, M. S. Mccormick, G. W. Han, S. T. O'Neal, B. F. Crav R. C. Stevens, A. H. Lichtman, D. L. Boger
Date :  08 Feb 13  (Deposition) - 01 May 13  (Release) - 08 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Otrubova, M. Brown, M. S. Mccormick, G. W. Han, S. T. O'Neal, B. F. Cravatt, R. C. Stevens, A. H. Lichtman, D. L. Boger
Rational Design Of Fatty Acid Amide Hydrolase Inhibitors That Act By Covalently Bonding To Two Active Site Residues.
J. Am. Chem. Soc. V. 135 6289 2013
PubMed-ID: 23581831  |  Reference-DOI: 10.1021/JA4014997

(-) Compounds

Molecule 1 - FATTY-ACID AMIDE HYDROLASE 1
    Chains: A, B
    EC Number: 3.5.1.99
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: DELTATM-FAAH (UNP RESIDUES 30-579)
    Gene: FAAH, FAAH1
    Mutation: YES
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: ANANDAMIDE AMIDOHYDROLASE 1, OLEAMIDE HYDROLASE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1BR12Ligand/Ion(1S)-1-{5-[5-(BROMOMETHYL)PYRIDIN-2-YL]-1,3-OXAZOL-2-YL}-7-PHENYLHEPTAN-1-OL
2CL1Ligand/IonCHLORIDE ION
3PEG5Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:190 , MET A:191 , PHE A:192 , SER A:193 , SER A:217 , THR A:236 , ASP A:237 , ILE A:238 , GLY A:239 , GLY A:240 , SER A:241 , CYS A:269 , LEU A:278 , THR A:488BINDING SITE FOR RESIDUE BR1 A 601
2AC2SOFTWAREASN A:434 , PRO A:438BINDING SITE FOR RESIDUE PEG A 602
3AC3SOFTWAREASN A:334 , TYR A:526 , HOH A:703BINDING SITE FOR RESIDUE PEG A 603
4AC4SOFTWARESER B:190 , MET B:191 , PHE B:192 , SER B:193 , SER B:217 , THR B:236 , ASP B:237 , ILE B:238 , GLY B:239 , GLY B:240 , SER B:241 , GLY B:268 , CYS B:269 , LEU B:278 , THR B:488BINDING SITE FOR RESIDUE BR1 B 601
5AC5SOFTWAREASN B:334 , TYR B:526BINDING SITE FOR RESIDUE PEG B 602
6AC6SOFTWAREARG B:437BINDING SITE FOR RESIDUE PEG B 603
7AC7SOFTWAREASN B:367 , HOH B:706 , HOH B:713BINDING SITE FOR RESIDUE PEG B 604
8AC8SOFTWAREASN A:259 , ASN B:259BINDING SITE FOR RESIDUE CL B 605

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J5P)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:216 -Ser A:217
2Gly A:476 -Pro A:477
3Gly B:216 -Ser B:217
4Gly B:476 -Pro B:477

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J5P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J5P)

(-) Exons   (0, 0)

(no "Exon" information available for 4J5P)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:544
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4j5pa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhh..........eeeee.............hhhhh.......hhhhhhhhhh..eeeeee..hhhhh....ee...ee..............hhhhhhhhhh....eeeeee....hhhhhhhhh.eeee.......................eeeeee.hhhhhhhhhhhhhhhhhhhhh........hhhhhh.....eeee.........hhhhhhhhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhh...hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhh.....hhhhhhhhhhh......eeeeeee....hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j5p A  33 GRQKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQK 576
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572    


Chain B from PDB  Type:PROTEIN  Length:545
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4j5pb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhh..........eeeee.............hhhhh.......hhhhhhhhhh..eeeeee..hhhhh....ee...ee..............hhhhhhhhhh....eeeeee....hhhhhhhhh.eeee.......................eeeeee.hhhhhhhhhhhhhhhhhhhhh........hhhhhh.....eeee.........hhhhhhhhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhh...hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhh.....hhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j5p B  33 GRQKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQ 577
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J5P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J5P)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:216 - Ser A:217   [ RasMol ]  
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    Gly B:476 - Pro B:477   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAAH1_RAT | P97612: 1mt5 2vya 2wap 2wj1 2wj2 3k7f 3k83 3k84 3lj6 3lj7 3oj8 3ppm 3pr0 3qj8 3qj9 3qk5 3qkv 4do3 4hbp

(-) Related Entries Specified in the PDB File

2wj1 FATTY ACID AMIDE HYDROLASE COMPLEXED WITH ANOTHER ALPHA- KETOOXAZOLE INHIBITOR
2wj2 FATTY ACID AMIDE HYDROLASE COMPLEXED WITH ANOTHER ALPHA- KETOOXAZOLE INHIBITOR
3k7f FATTY ACID AMIDE HYDROLASE COMPLEXED WITH ANOTHER ALPHA- KETOOXAZOLE INHIBITOR
3k83 FATTY ACID AMIDE HYDROLASE COMPLEXED WITH ANOTHER ALPHA- KETOOXAZOLE INHIBITOR
3k84 FATTY ACID AMIDE HYDROLASE COMPLEXED WITH ANOTHER ALPHA- KETOOXAZOLE INHIBITOR
3pr0 FATTY ACID AMIDE HYDROLASE COMPLEXED WITH ANOTHER ALPHA- KETOOXAZOLE INHIBITOR