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(-) Description

Title :  CRYSTAL STRUCTURE OF FAAH IN COMPLEX WITH INHIBITOR
 
Authors :  C. Behnke, R. J. Skene
Date :  28 Sep 12  (Deposition) - 06 Feb 13  (Release) - 06 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.91
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Fatty Acid Amide Hydrolase, Amidase Activity, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kono, T. Matsumoto, T. Kawamura, A. Nishimura, Y. Kiyota, H. Oki, J. Miyazaki, S. Igaki, C. A. Behnke, M. Shimojo, M. Kori
Synthesis, Sar Study, And Biological Evaluation Of A Series Of Piperazine Ureas As Fatty Acid Amide Hydrolase (Faah) Inhibitors.
Bioorg. Med. Chem. V. 21 28 2013
PubMed-ID: 23218778  |  Reference-DOI: 10.1016/J.BMC.2012.11.006

(-) Compounds

Molecule 1 - FATTY-ACID AMIDE HYDROLASE 1
    Chains: A, B
    EC Number: 3.5.1.99
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FAAH, FAAH1
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: ANANDAMIDE AMIDOHYDROLASE 1, OLEAMIDE HYDROLASE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
117J2Ligand/Ion4-(3-PHENYL-1,2,4-THIADIAZOL-5-YL)-N-(PYRIDIN-3-YL)PIPERAZINE-1-CARBOXAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:191 , SER A:193 , PHE A:194 , ASP A:237 , ILE A:238 , GLY A:239 , GLY A:240 , SER A:241 , PHE A:381 , MET A:436 , THR A:488BINDING SITE FOR RESIDUE 17J A 600
2AC2SOFTWARESER B:193 , ASP B:237 , ILE B:238 , GLY B:239 , SER B:241 , PHE B:381 , MET B:436 , THR B:488BINDING SITE FOR RESIDUE 17J B 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HBP)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:216 -Ser A:217
2Gly A:476 -Pro A:477
3Gly B:216 -Ser B:217
4Gly B:476 -Pro B:477

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HBP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HBP)

(-) Exons   (0, 0)

(no "Exon" information available for 4HBP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:531
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4hbpa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.eeee..............eeeee.............hhhhh.......hhhhhhhhhh..eeeeee...........ee...ee..............hhhhhhhhhh....eeeeee....hhhhhhhhh.eeee.......................eeeeee.hhhhhhhhhhhhhhhhhhhh.........hhhhhh.....eeee.........hhhhhhhhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhh.....hhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhh...eeeeeeee.hhhhhhhhhhh.....hhhhhhhhhhh......eeeeeeee...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hbp A  37 ARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMT 573
                                    46        56        66        76        86        96       106       116 ||    132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572 
                                                                                                           118|                                                                                                                                                                                                                                                                                                                                                                                                                                                                
                                                                                                            125                                                                                                                                                                                                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:535
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4hbpb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.eeee..............eeeee.............hhhhh.......hhhhhhhhhh..eeeeee...........ee...ee..............hhhhhhhhhh....eeeeee....hhhhhhhhh.eeee.......................eeeeee.hhhhhhhhhhhhhhhhhhhh.........hhhhhh.....eeee.........hhhhhhhhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhh.....hhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhh...eeeeeeee.hhhhhhhhhhh.....hhhhhhhhhhh......eeeeeee....hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hbp B  37 ARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQ 577
                                    46        56        66        76        86        96       106       116    || 132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572     
                                                                                                              121|                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                               128
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HBP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HBP)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:216 - Ser A:217   [ RasMol ]  
    Gly A:476 - Pro A:477   [ RasMol ]  
    Gly B:216 - Ser B:217   [ RasMol ]  
    Gly B:476 - Pro B:477   [ RasMol ]  
 

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  4hbp
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  FAAH1_RAT | P97612
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  3.5.1.99
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAAH1_RAT | P97612: 1mt5 2vya 2wap 2wj1 2wj2 3k7f 3k83 3k84 3lj6 3lj7 3oj8 3ppm 3pr0 3qj8 3qj9 3qk5 3qkv 4do3 4j5p

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4HBP)