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(-) Description

Title :  N10-FORMYLTETRAHYDROFOLATE SYNTHETASE FROM MOORELLA THERMOACETICA WITH FOLATE
 
Authors :  B. Stec
Date :  08 Jan 13  (Deposition) - 10 Apr 13  (Release) - 12 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Alpha/Beta, Enzyme, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Stec
Time Passes Yet Errors Remain: Comments On The Structure Of N(10) -Formyltetrahydrofolate Synthetase.
Protein Sci. V. 22 671 2013
PubMed-ID: 23533144  |  Reference-DOI: 10.1002/PRO.2252

(-) Compounds

Molecule 1 - FORMATE--TETRAHYDROFOLATE LIGASE
    ChainsA, B
    EC Number6.3.4.3
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneFHS, MOTH_0109
    Organism ScientificMOORELLA THERMOACETICA
    Organism Taxid264732
    StrainATCC 39073
    SynonymFORMYLTETRAHYDROFOLATE SYNTHETASE, FHS, FTHFS

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (2x)AB
Biological Unit 2 (2x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1FOL1Ligand/IonFOLIC ACID
2SO47Ligand/IonSULFATE ION
3TOE3Ligand/Ion2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
Biological Unit 1 (3, 22)
No.NameCountTypeFull Name
1FOL2Ligand/IonFOLIC ACID
2SO414Ligand/IonSULFATE ION
3TOE6Ligand/Ion2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
Biological Unit 2 (3, 22)
No.NameCountTypeFull Name
1FOL2Ligand/IonFOLIC ACID
2SO414Ligand/IonSULFATE ION
3TOE6Ligand/Ion2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:74 , ARG A:97 , GLY A:303 , PHE A:304BINDING SITE FOR RESIDUE SO4 A 601
02AC2SOFTWAREGLU A:34 , SER A:44 , LYS A:256BINDING SITE FOR RESIDUE SO4 A 602
03AC3SOFTWAREARG A:175 , ARG A:178 , MET A:533 , GLY A:537BINDING SITE FOR RESIDUE SO4 A 603
04AC4SOFTWARESER A:446 , LYS A:448 , ARG A:507BINDING SITE FOR RESIDUE SO4 A 604
05AC5SOFTWARELYS A:448 , ARG A:507 , HOH A:788 , HOH A:789BINDING SITE FOR RESIDUE SO4 A 605
06AC6SOFTWAREARG A:162 , ILE A:164 , HOH A:803BINDING SITE FOR RESIDUE TOE A 606
07AC7SOFTWAREARG A:224 , GLY A:481 , TYR A:482BINDING SITE FOR RESIDUE TOE A 607
08AC8SOFTWAREALA A:383 , PHE A:384 , PRO A:385 , GLU A:389 , LEU A:392 , TYR A:396 , LEU A:408 , TRP A:412 , GLU A:417 , HOH A:709BINDING SITE FOR RESIDUE FOL A 608
09AC9SOFTWAREARG B:162 , ILE B:164 , GLU B:194BINDING SITE FOR RESIDUE TOE B 600
10BC1SOFTWAREALA A:188 , ARG B:175 , ARG B:178 , MET B:533 , GLY B:537BINDING SITE FOR RESIDUE SO4 B 601
11BC2SOFTWARELYS B:74 , ARG B:97 , GLY B:303 , PHE B:304BINDING SITE FOR RESIDUE SO4 B 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IOM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:120 -Pro A:121
2Val B:120 -Pro B:121

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IOM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IOM)

(-) Exons   (0, 0)

(no "Exon" information available for 4IOM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:557
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4ioma_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh...hhhhhhhhh..hhh.eee.....eeehhhhhhhhh.....eeeeeee........hhhhhhhhhhhhhhhh...eeeee....hhhhhh......ee..eeeehhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eee...hhhhh.eee..........eee.eee...hhhhhhhhhh.hhhhhhhhhh..eeee.....eeehhhhhhhhhhhhhh......eeeee....eeee.............hhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh....eeehhhhhhhhhhhhhh..............................eee.eeeee....eeeee.............hhhhh.ee.....ee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iom A   3 KVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSEVWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGAGFIVPITGAIMTMPGLPKRPAACNIDIDADGVITGLF 559
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       

Chain B from PDB  Type:PROTEIN  Length:557
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4iomb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh...hhhhhhhh...hhhhh.......ee..hhhhhhh......eeeeeee..........hhhhhhhhhhhhhh...eeeee....hhhhh......eee..eeeehhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eee...hhhhh.eee...hhhhh..eee.eee...hhhhhhhhhh.hhhhhhhhhhhheeee.....eee.hhhhhhhhhhhhh......eeeee....eeee.............hhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhh.........................eee.eeeee....eeeee.............hhhhh.ee.....ee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iom B   3 KVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSEVWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGAGFIVPITGAIMTMPGLPKRPAACNIDIDADGVITGLF 559
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IOM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IOM)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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        FTHS_MOOTA | Q2RM914ioj 4iok 4iol 4jim 4jjk 4jjz 4jki

(-) Related Entries Specified in the PDB File

3qb6