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(-) Description

Title :  CRYSTAL STRUCTURE OF COMPOUND 4E BOUND TO LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS
 
Authors :  S. Han, E. S. Marr
Date :  07 Jan 13  (Deposition) - 06 Mar 13  (Release) - 20 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3,4
Keywords :  Ribosome-Ribosome Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. V. Magee, S. Han, S. P. Mccurdy, T. T. Nguyen, K. Granskog, E. S. Marr, B. A. Maguire, M. D. Huband, J. M. Chen, T. A. Subashi, V. Shanmugasundaram
Novel 3-O-Carbamoyl Erythromycin A Derivatives (Carbamolides) With Activity Against Resistant Staphylococcal And Streptococcal Isolates.
Bioorg. Med. Chem. Lett. V. 23 1727 2013
PubMed-ID: 23414806  |  Reference-DOI: 10.1016/J.BMCL.2013.01.067

(-) Compounds

Molecule 1 - 23S RIBOSOMAL RNA
    Chains: X
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 2 - 5S RIBOSOMAL RNA
    Chains: Y
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 3 - 50S RIBOSOMAL PROTEIN L2
    Chains: A
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 4 - 50S RIBOSOMAL PROTEIN L3
    Chains: B
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 5 - 50S RIBOSOMAL PROTEIN L4
    Chains: C
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 6 - 50S RIBOSOMAL PROTEIN L5
    Chains: D
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 7 - 50S RIBOSOMAL PROTEIN L6
    Chains: E
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 8 - 50S RIBOSOMAL PROTEIN L11
    Chains: F
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 9 - 50S RIBOSOMAL PROTEIN L13
    Chains: G
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 10 - 50S RIBOSOMAL PROTEIN L14
    Chains: H
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 11 - 50S RIBOSOMAL PROTEIN L15
    Chains: I
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 12 - 50S RIBOSOMAL PROTEIN L16
    Chains: J
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 13 - 50S RIBOSOMAL PROTEIN L17
    Chains: K
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 14 - 50S RIBOSOMAL PROTEIN L18
    Chains: L
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 15 - 50S RIBOSOMAL PROTEIN L19
    Chains: M
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 16 - 50S RIBOSOMAL PROTEIN L20
    Chains: N
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 17 - 50S RIBOSOMAL PROTEIN L21
    Chains: O
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 18 - 50S RIBOSOMAL PROTEIN L22
    Chains: P
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 19 - 50S RIBOSOMAL PROTEIN L23
    Chains: Q
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 20 - 50S RIBOSOMAL PROTEIN L24
    Chains: R
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 21 - 50S RIBOSOMAL PROTEIN L25
    Chains: S
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 22 - 50S RIBOSOMAL PROTEIN L27
    Chains: T
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 23 - 50S RIBOSOMAL PROTEIN L28
    Chains: U
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 24 - 50S RIBOSOMAL PROTEIN L29
    Chains: V
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 25 - 50S RIBOSOMAL PROTEIN L30
    Chains: W
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 26 - 50S RIBOSOMAL PROTEIN L32
    Chains: Z
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 27 - 50S RIBOSOMAL PROTEIN L33
    Chains: 1
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 28 - 50S RIBOSOMAL PROTEIN L34
    Chains: 2
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 29 - 50S RIBOSOMAL PROTEIN L35
    Chains: 3
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
 
Molecule 30 - 50S RIBOSOMAL PROTEIN L36
    Chains: 4
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324252627282930
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOPQRSTUVWXYZ1234

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 36)

Asymmetric/Biological Unit (2, 36)
No.NameCountTypeFull Name
11F31Ligand/Ion(3AS,4R,7R,8S,9S,10R,11R,13R,15R,15AR)-4-ETHYL-11-METHOXY-3A,7,9,11,13,15-HEXAMETHYL-2,6,14-TRIOXO-10-{[3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSYL]OXY}TETRADECAHYDRO-2H-OXACYCLOTETRADECINO[4,3-D][1,3]OXAZOL-8-YL (2R)-2-[4-(ACETYLAMINO)PHENYL]-2,3-DIHYDRO-1H-PYRROLE-1-CARBOXYLATE
2MG35Ligand/IonMAGNESIUM ION

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREG X:2466BINDING SITE FOR RESIDUE MG X 2901
02AC2SOFTWAREU X:2057 , U X:2222BINDING SITE FOR RESIDUE MG X 2902
03AC3SOFTWAREG X:2415BINDING SITE FOR RESIDUE MG X 2903
04AC4SOFTWAREU X:1370 , C X:1385BINDING SITE FOR RESIDUE MG X 2904
05AC5SOFTWAREG X:746 , A X:747 , G X:772BINDING SITE FOR RESIDUE MG X 2905
06AC6SOFTWAREC X:745 , G X:772 , G X:773BINDING SITE FOR RESIDUE MG X 2906
07AC7SOFTWAREG X:1767BINDING SITE FOR RESIDUE MG X 2907
08AC8SOFTWAREG X:1763 , C X:1765BINDING SITE FOR RESIDUE MG X 2908
09AC9SOFTWAREG X:2743BINDING SITE FOR RESIDUE MG X 2910
10BC1SOFTWAREG X:2555 , A X:2556BINDING SITE FOR RESIDUE MG X 2911
11BC2SOFTWAREG X:2805 , G X:2806BINDING SITE FOR RESIDUE MG X 2913
12BC3SOFTWAREA X:1980BINDING SITE FOR RESIDUE MG X 2915
13BC4SOFTWAREG X:2665BINDING SITE FOR RESIDUE MG X 2916
14BC5SOFTWAREG X:2699BINDING SITE FOR RESIDUE MG X 2918
15BC6SOFTWAREA X:815BINDING SITE FOR RESIDUE MG X 2919
16BC7SOFTWAREG X:1993BINDING SITE FOR RESIDUE MG X 2920
17BC8SOFTWAREG X:1761BINDING SITE FOR RESIDUE MG X 2922
18BC9SOFTWAREG X:1266BINDING SITE FOR RESIDUE MG X 2925
19CC1SOFTWAREG X:462 , G X:464BINDING SITE FOR RESIDUE MG X 2926
20CC2SOFTWAREG X:464 , C X:465BINDING SITE FOR RESIDUE MG X 2927
21CC3SOFTWAREU X:2485BINDING SITE FOR RESIDUE MG X 2929
22CC4SOFTWAREG X:2425 , G X:2426BINDING SITE FOR RESIDUE MG X 2930
23CC5SOFTWAREARG P:111 , C X:759 , A X:2041 , A X:2042 , A X:2045 , A X:2482 , G X:2484 , G X:2560 , C X:2589 , U X:2590 , ALA Z:2BINDING SITE FOR RESIDUE 1F3 X 2931
24CC6SOFTWAREC Y:98BINDING SITE FOR RESIDUE MG Y 203
25CC7SOFTWAREA Y:91BINDING SITE FOR RESIDUE MG Y 205

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Z:36 -Z:49

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu C:19 -Pro C:20

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IOA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IOA)

(-) Exons   (0, 0)

(no "Exon" information available for 4IOA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:53
                                                                                      
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ..................................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                4ioa 1    2 AKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK   54
                                    11        21        31        41        51   


Chain 2 from PDB  Type:PROTEIN  Length:46
                                                                               
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .............................................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                4ioa 2    1 MKRTYQPNNRKRAKTHGFRARMKTKSGRNILARRRAKGRHQLTVSD   46
                                    10        20        30        40      


Chain 3 from PDB  Type:PROTEIN  Length:63
                                                                                                
               SCOP domains --------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                4ioa 3    2 PKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWARMKLMLPR   64
                                    11        21        31        41        51        61   


Chain 4 from PDB  Type:PROTEIN  Length:37
                                                                      
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author .ee.........................hhhh.ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                4ioa 4    1 MKVRSSVKKMCDNCKVVRRHGRVLVICSNVKHKQRQG   37
                                    10        20        30       


Chain A from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee......................ee......hhhhh..eeeeeeee........eeeeee....eeeee.........eee......................eee...................eeeeee....eeee.....eeee......ee............................hhhhh..................................hhhhh.ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ioa A   33 LTEALPKTGGRNNRGRITSRFIGGGHKRLYRIIDFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEKRYILAPEGLTVGATVNAGPEAEPKLGNALPLRFVPVGAVVHALELVPGKGAQLARSAGTSVQVQGKESDYVIVRLPSGELRRVHSECYATIGAVGNAEHKNIVLGKAGRSRWLGRKPHQRGSAMNPVDHPHGGGEGRTGAGRVPVTPWGKPTKGLKTRRKRKTSDRFIVT  272
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272


Chain B from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeee..eeeeeeeee.....eeeee........eeeee....hhhhhhhhhhhhhhh........eeeee..................eeeeeee.....eehhhhhhh....................................ee....eeeeeeeeeeeee....eeeee.........eeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ioa B    1 MKGILGTKIGMTQIWKNDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVNKPMQGHFAKAGVAPTRILREFRGFAPDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEIRAGENLILVKGAIPGANGGLVVLRSAAKAS  205
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200     


Chain C from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhhhh........................................................hhhhhhhhhhhhhhhhh...ee............hhhhhhhhhhh.......eeee..hhhhhh.......eeee.....hhhhhhhh.eee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ioa C    2 AQINVIGQNGGRTIELPLPEVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEIVEE  198
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       


Chain D from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh.................eeeeeeee.......hhhhhhhhhhhhhhhh....eeee..............eeeeeeee.hhhhhhhhhhhhhh.....................eeeee.........hhhhh.....eeeeeee...hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ioa D    3 QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKTDEEARALLQSMGLPFRK  179
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       


Chain E from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee......eee..............eee......eee.....hhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee....eeeee..eeeee......eee.....eeee.....eeeeee.hhhhhhhhhhhhhhhh........eeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ioa E    5 GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGK  175
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174 


Chain F from PDB  Type:PROTEIN  Length:71
                                                                                                        
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.............ee..hhhhhhhhh..........hhhhhh.hhhhhhhhhee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                4ioa F   74 MSYLIRKAAGIGKGSSTPNKAKVGKLNWDQVLEIAKTKMPDLNAGSVEAAANTVAGTARSMGVTVEGGPNA  144
                                    83        93       103       113       123       133       143 


Chain G from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....hhhhhhhhhhhhhhh..............eeeeehhhhh..........ee.............ee......hhhhhhhhhhhhh...hhhhhhhh..eee......hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ioa G   30 KTYIPKNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL  171
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169  


Chain H from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.....eeeeeeeee.........................eeeeeeeee..........eeeeeeee....ee.....eeee...eeeee................hhhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ioa H    1 MIMPQSRLDVADNSGAREIMCIRVLNSGIGGKGLTTGGGGNKRYAHVGDIIVASVKDAAPRGAVKAGDVVKAVVVRTSHAIKRADGSTIRFDRNAAVIINNQGEPRGTRVFGPVARELRDRRFMKIVSLAPEVL  134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    


Chain I from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................................................................eeeehhhhh........................eeee........eee...eehhhhhhhhh...eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ioa I    4 HDLKPTPGSRKDRKRVGRGPGGTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKRGFNNVGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGRVVLPE  144
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143 


Chain J from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................eeeee...eeeehhhhhhhhhhhhhhh.....eee.....eee.................eeeeee....eeeee...hhhhhhhhhhhhhhh....eeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ioa J    6 KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA  141
                                    15        25        35        45        55        65        75        85        95       105       115       125       135      


Chain K from PDB  Type:PROTEIN  Length:113
                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhh........eeeeeee......eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                4ioa K    3 HGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIEL  115
                                    12        22        32        42        52        62        72        82        92       102       112   


Chain L from PDB  Type:PROTEIN  Length:104
                                                                                                                                         
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.eeee..........eee.......................hhhhhhhhhhhhhhh.....eeee.......hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                4ioa L    8 RRKLRTRRKVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALKSGNKTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREGG  111
                                    17        27        37        47        57        67        77        87        97       107    


Chain M from PDB  Type:PROTEIN  Length:108
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh............eeeeeee.......eeeeeeeeeeeee.hhhh.eeeeeeee..eeeeeeee.....eeeeee..........hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                4ioa M    2 QTHIKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE  109
                                    11        21        31        41        51        61        71        81        91       101        


Chain N from PDB  Type:PROTEIN  Length:117
                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                4ioa N    2 PRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNARQ  118
                                    11        21        31        41        51        61        71        81        91       101       111       


Chain O from PDB  Type:PROTEIN  Length:94
                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee..........eee...ee......ee........eeeeeeeeee...eeeeeee....eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                4ioa O    5 IQTGGKQYRVSEGDVIRVESLQGEAGDKVELKALFVGGEQTVFGEDAGKYTVQAEVVEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGI   98
                                    14        24        34        44        54        64        74        84        94    


Chain P from PDB  Type:PROTEIN  Length:127
                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh......eeeeeee..hhhhhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...hhh.eeeeeeeeee...eeeeee.hhh.eeeeee..eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ioa P    8 FRNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGNK  134
                                    17        27        37        47        57        67        77        87        97       107       117       127       


Chain Q from PDB  Type:PROTEIN  Length:93
                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee..hhhhhhhhh..eeeee.....hhhhhhhhhhhhhh..eeeeeeeee................eeeeeeee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                4ioa Q    2 SHYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRLAEGQSIEALAGQ   94
                                    11        21        31        41        51        61        71        81        91   


Chain R from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eee.........eeeeeeee....eeee...eeeee............eeeee........................................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                4ioa R    4 PSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQIVDGKKVRVAVASGKT  113
                                    13        23        33        43        53        63        73        83        93       103       113


Chain S from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..eeeeeee......eeeeehhhhhhhhhhhh...eeeee.....eeeeeeeeeee......eeeeeeee........eeeeeeee..........eeee...eeee...........eeee........eee..................eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ioa S    1 MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR  175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain T from PDB  Type:PROTEIN  Length:84
                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....................ee......ee....eeee......ee...eee.....eee...eeeeeee.....eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                4ioa T    2 AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKGKGARFISIEAAQ   85
                                    11        21        31        41        51        61        71        81    


Chain U from PDB  Type:PROTEIN  Length:72
                                                                                                         
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......................................................hhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                4ioa U    8 TGKKNLVVNSVIRRGKARADGGVGRKTTGITKRVQRANLHKKAIRENGQVKTVWLSANALRTLSKGPYKGIE   79
                                    17        27        37        47        57        67        77  


Chain V from PDB  Type:PROTEIN  Length:66
                                                                                                   
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                4ioa V    1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAELARKGEQ   66
                                    10        20        30        40        50        60      


Chain W from PDB  Type:PROTEIN  Length:55
                                                                                        
               SCOP domains ------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.......hhhhhhhhhhh.......eee...hhhhhhhhhhh...eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                4ioa W    1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE   55
                                    10        20        30        40        50     


Chain X from PDB  Type:RNA  Length:2686
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
                4ioa X    1 GGUCAAGAUAGUAAGGGUCCACGGUGGAUGCCCUGGCGCUGGAGCCGAUGAAGGACGCGAUUACCUGCGAAAAGCCCCGACGAGCUGGAGAUACGCUUUGACUCGGGGAUGUCCGAAUGGGGAAACCCACCUCGUAAGAGGUAUCCGCAAGGAUGGGAACUCAGGGAACUGAAACAUCUCAGUACCUGAAGGAGAAGAAAGAGAAUUCGAUUCCGUUAGUAGCGGCGAGCGAACCCGGAUCAGCCCAAUCAAGCCGAAGUGGCUGGAAAGCUACACCUCAGAAGGUGAGAGUCCUGUAGGCGAACGAGAGGUCGUUGUUCGUGAAACGAUGACUGAAUCCGCGCGGACCACCGCGCAAGGCUAAAUACUCCCAGUGACCGAUAGCGCAUAGUACCGUGAGGGAAAGGUGAAAAGAACCCCGGGAGGGGAGUGAAAGAGAACCUGAAACCGUGGACUUACAAGCAGUCAUGGCACCUUAUGCGUGUUAUGGCGUGCCUAUUGAAGCAUGAGCCGGCGACUUAGACCUGACGUGCGAGCUUAAGUUGAAAAACGGAGGCGGAGCGAAAGCGAGUCCGAAUAGGGCGGCAUUAGUACGUCGGGCUAGACUCGAAACCAGGUGAGCUAAGCAUGACCAGGUUGAAACCCCCGUGACAGGGGGCGGAGGACCGAACCGGUGCCUGCUGAAACAGUCUCGGAUGAGUUGUGUUUAGGAGUGAAAAGCUAACCGAACCUGGAGAUAGCUAGUUCUCCCCGAAAUGUAUUGAGGUACAGCCUCGGAUGUUGACCAUGUCCUGUAGAGCACUCACAAGGCUAAAACCUUAUGAAACUCCGAAGGGGCACGCGUUUAGUCCGGGAGUGAGGCUGCGAGAGCUAACUUCCGUAGCCGAGAGGGAAACAACCCAGACCAUCAGCUAAGGUCCCUAAAUGAUCGCUCAGUGGUUAAGGAUGUGUCGUCGCAUAGACAGCCAGGAGGUUGGCUUAGAAGCAGCCACCCUUCAAAGAGUGCGUAAUAGCUCACUGGUCGAGUGACGAUGCGCCGAAAAUGAUCGGGGCUCAAGUGAUCUACCGAAGCUAUGGAUUCAACUCGCGAAGCGAGUUGUCUGGUAGGGGAGCGUUCAGUCCGCGGAGAAGCCAUACCGGAAGGAGUGGUGGAGCCGACUGAAGUGCGGAUGCCGGCAUGAGUAACGAUAAAAGAAGUGAGAAUCUUCUUCGCCGUAAGGACAAGGGUUCCUGGGGAAGGGUCGUCCGCCCAGGGAAAGUCGGGACCUAAGGUGAGGCCGAACGGCGCAGCCGAUGGACAGCAGGUCAAGAUUCCUGCACCGAUCAUGUGGAGUGAUGGAGGGACGCAUUACGCUAUCCAAUGCCAAGCUAUGGCUAUGCUGGUUGGUACGCUCAAGGGCGAUCGGGUCAGAAAAUCUACCGGUCACAUGCCUCAGACGUAUCGGGAGCUUCCUCGGAAGCGAAGUUGGAAACGCGACGGUGCCAAGAAAAGCUUCUAAACGUUGAAACAUGAUUGCCCGUACCGCAAACCGACACAGGUGUCCGAGUGUCAAUGCACUAAGGCGCGCGAGAGAACCCUCGUUAAGGAACUUUGCAAUCUCACCCCGUAACUUCGGAAGAAGGGGUCCCCACGCUUCGCGUGGGGCGCAGUGAAUAGGCCCAGGCGACUGUUUACCAAAAUCACAGCACUCUGCCAACACGAACAGUGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUCAAGUGGAGCGGUGCAAGCUGCGAAAUGAAGCCCCGGUGAACGGCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAAGGCGUAACGAUCUGGGCGCUGUCUCAACGAGGGACUCGGUGAAAUUGAAUUGGCUGUAAAGAUGCGGCCUACCCGUAGCAGGACGAAAAGACCCCGUGGAGCUUUACUAUAGUCUGGCAUUGGGAUUCGGGUUUCUAGAAACUUGGAUUUCUAACCUGAAAAAUCACUUUCGGGGACCGUGCUUGGCGGGUAGUUUGACUGGGGCGGUCGCCUCCCAAAAUGUAACGGAGGCGCCCAAAGGUCACCUCAAGACGGUUGGAAAUCGUCUGUAGAGCGCAAAGGUAGAAGGUGGCUUGACUGCGAGACUGACACGUCGAGCAGGGAGGAAACUCGGGCUUAGUGAACCGGUGGUACCGUGUGGAAGGGCCAUCGAUCAACGGAUAAAAGUUACCCCGGGGAUAACAGGCUGAUCUCCCCCGAGAGUCCAUAUCGGCGGGGAGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGAAGAAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCUACGGGCGCAGGAGAAUUGAGGGGAGUUGCUCCUAGUACGAGAGGACCGGAGUGAACGGACCGCUGGUCUCCCUGCUGUCGUACCAACGGCACAUGCAGGGUAGCUAUGUCCGGAACGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCAGCCCCAAGAUGAGUUCUCCCACUGUUUAUCAGGUAAGACUCCCGGAAGACCACCGGGUUAAGAGGCCAGGCGUGCACGCAUAGCAAUGUGUUCAGCGGACUGGUGCUCAUCAGUCGAGGUCUUGACCA 2877
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       303       313       323       333       343       353       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888  ||   917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      1417      1427      1437      1447      1457      1467      1477      1487      1497      1507      1517      1527      1537      1547      1557      1567      1577      1587      1597      1607      1617      1627      1637      1647      1657      1667      1677      1687      1697      1707      1717      1727      1737      1747      1757      1767      1777      1787      1797      1807      1817      1827      1837      1847      1857      1867      1877      1887||    1917      1927      1937      1947      1957      1967      1977      1987      1997      2007      2017      2027      2037      2047      2057      2067      2077      2087  ||  2171      2181      2191      2201      2211      2221      2231      2241      2251      2261      2271      2281      2291      2301      2311      2321      2331      2341      2351      2361      2371      2381      2391      2401      2411      2421      2431      2441      2451      2461      2471      2481      2491      2501      2511      2521      2531      2541      2551      2561      2571      2581      2591      2601      2611      2621      2631      2641      2651      2661      2671      2681      2691      2701      2711      2721      2731      2741      2751      2761      2771      2781      2791      2801      2811      2821      2831      2841      2851      2861      2871      
                                                                                                                                                                                                                                                                                 248|                                                        361|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     891|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             1888|                                                                                                                                                                                 2090|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
                                                                                                                                                                                                                                                                                  302                                                         387                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      911                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              1909                                                                                                                                                                                  2165                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        


Chain Y from PDB  Type:RNA  Length:122
                                                                                                                                                           
                4ioa Y    2 CACCCCCGUGCCCAUAGCACUGUGGAACCACCCCACCCCAUGCCGAACUGGGUCGUGAAACACAGCAGCGCCAAUGAUACUCGGACCGCAGGGUCCCGGAAAAGUCGGUCAGCGCGGGGGUU  123
                                    11        21        31        41        51        61        71        81        91       101       111       121  


Chain Z from PDB  Type:PROTEIN  Length:58
                                                                                           
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhh......eeee...eeeee.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                4ioa Z    2 AKHPVPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLSHHICPNCGYYDGRQVLA   59
                                    11        21        31        41        51
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IOA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IOA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IOA)

(-) Gene Ontology  (19, 233)

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  4ioa
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
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Access by UniProt ID/Accession number
  RL11_DEIRA | Q9RSS7
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    Protein-protein Interaction: DIP
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  RL13_DEIRA | Q9RXY1
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  RL14_DEIRA | Q9RXJ2
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  RL15_DEIRA | Q9RSK9
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  RL16_DEIRA | Q9RXJ5
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  RL17_DEIRA | Q9RSJ5
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  RL18_DEIRA | Q9RSL2
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  RL19_DEIRA | Q9RWB4
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    Protein-protein Interaction: DIP
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  RL20_DEIRA | Q9RSW7
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  RL21_DEIRA | Q9RY64
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  RL22_DEIRA | Q9RXJ7
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    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RL23_DEIRA | Q9RXK0
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  RL24_DEIRA | Q9RXJ1
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RL25_DEIRA | Q9RX88
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RL27_DEIRA | Q9RY65
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RL28_DEIRA | Q9RRG8
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RL29_DEIRA | Q9RXJ4
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
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  RL2_DEIRA | Q9RXJ9
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  RL30_DEIRA | Q9RSL0
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    Protein-protein Interaction: DIP
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  RL32_DEIRA | P49228
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    Protein-protein Interaction: DIP
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  RL33_DEIRA | Q9RSS4
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    Protein-protein Interaction: DIP
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  RL34_DEIRA | Q9RSH2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RL35_DEIRA | Q9RSW6
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RL36_DEIRA | Q9RSK0
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RL3_DEIRA | Q9RXK2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RL4_DEIRA | Q9RXK1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RL5_DEIRA | Q9RXJ0
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RL6_DEIRA | Q9RSL3
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  RL11_DEIRA | Q9RSS7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL13_DEIRA | Q9RXY1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL14_DEIRA | Q9RXJ2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL15_DEIRA | Q9RSK9
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL16_DEIRA | Q9RXJ5
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL17_DEIRA | Q9RSJ5
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL18_DEIRA | Q9RSL2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL19_DEIRA | Q9RWB4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL20_DEIRA | Q9RSW7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL21_DEIRA | Q9RY64
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL22_DEIRA | Q9RXJ7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL23_DEIRA | Q9RXK0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL24_DEIRA | Q9RXJ1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL25_DEIRA | Q9RX88
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL27_DEIRA | Q9RY65
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL28_DEIRA | Q9RRG8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL29_DEIRA | Q9RXJ4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL2_DEIRA | Q9RXJ9
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL30_DEIRA | Q9RSL0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL32_DEIRA | P49228
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL33_DEIRA | Q9RSS4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL34_DEIRA | Q9RSH2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL35_DEIRA | Q9RSW6
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL36_DEIRA | Q9RSK0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL3_DEIRA | Q9RXK2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL4_DEIRA | Q9RXK1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL5_DEIRA | Q9RXJ0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  RL6_DEIRA | Q9RSL3
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RL11_DEIRA | Q9RSS7: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4v49 4v4a 4v4g 5dm6 5dm7 5jvg
        RL13_DEIRA | Q9RXY1: 1gs2 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL14_DEIRA | Q9RXJ2: 1gs2 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL15_DEIRA | Q9RSK9: 1gs2 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL16_DEIRA | Q9RXJ5: 1gs2 1njm 1njp 1nkw 1nwx 1nwy 1sm1 1xbp 1y69 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL17_DEIRA | Q9RSJ5: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL18_DEIRA | Q9RSL2: 1gs2 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL19_DEIRA | Q9RWB4: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL20_DEIRA | Q9RSW7: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4v4t 4wfn 5dm6 5dm7 5jvg 5jvh
        RL21_DEIRA | Q9RY64: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4v4t 4wfn 5dm6 5dm7 5jvg 5jvh
        RL22_DEIRA | Q9RXJ7: 1j5a 1jzx 1jzy 1jzz 1k01 1nkw 1nwx 1nwy 1ond 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL23_DEIRA | Q9RXK0: 1gs2 1nkw 1nwx 1nwy 1sm1 1xbp 2aar 2d3o 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL24_DEIRA | Q9RXJ1: 1gs2 1nkw 1nwx 1nwy 1sm1 1xbp 2d3o 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL25_DEIRA | Q9RX88: 1njm 1njp 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4v4p 4v4r 4v4s 4v4t 4wfn 5dm6 5dm7 5jvg 5jvh
        RL27_DEIRA | Q9RY65: 1nkw 1nwx 1nwy 1sm1 1xbp 1y69 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4v4t 4wfn 5dm6 5dm7 5jvg 5jvh
        RL28_DEIRA | Q9RRG8: 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4wfn 5dm6 5dm7 5jvg 5jvh
        RL29_DEIRA | Q9RXJ4: 1nkw 1nwx 1nwy 1sm1 1xbp 2aar 2d3o 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL2_DEIRA | Q9RXJ9: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL30_DEIRA | Q9RSL0: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL32_DEIRA | P49228: 1j5a 1jzx 1jzy 1jzz 1k01 1nkw 1nwx 1nwy 1ond 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4v4t 4wfn 5dm6 5dm7 5jvg 5jvh
        RL33_DEIRA | Q9RSS4: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4v4r 4v4s 4v4t 4wfn 5dm6 5dm7 5jvg 5jvh
        RL34_DEIRA | Q9RSH2: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4v4p 4v4r 4v4s 4v4t 4wfn 5dm6 5dm7 5jvg 5jvh
        RL35_DEIRA | Q9RSW6: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4v4t 4wfn 5dm6 5dm7 5jvg 5jvh
        RL36_DEIRA | Q9RSK0: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4v49 4v4a 4v4g 4v4t
        RL3_DEIRA | Q9RXK2: 1nkw 1nwx 1nwy 1sm1 1xbp 2ogm 2ogn 2ogo 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL4_DEIRA | Q9RXK1: 1j5a 1jzx 1jzy 1jzz 1k01 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4wfn 5dm6 5dm7 5jvg 5jvh
        RL5_DEIRA | Q9RXJ0: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh
        RL6_DEIRA | Q9RSL3: 1nkw 1nwx 1nwy 1sm1 1xbp 2zjp 2zjq 2zjr 3cf5 3dll 3pio 3pip 4io9 4ioc 4u67 4v49 4v4a 4v4g 4wfn 5dm6 5dm7 5jvg 5jvh

(-) Related Entries Specified in the PDB File

4io9 COMPOUND 4D BOUND TO LARGE RIBOSOMAL SUBUNIT
4ioc COMPOUND 4F BOUND TO LARGE RIBOSOMAL SUBUNIT