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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS CARD
 
Authors :  K. G. Thakur, G. Kaur
Date :  01 Jan 13  (Deposition) - 30 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Tudor Like Domain, Five Helical Fold, Rna Polymerase Binding, Transcription Regulation, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Kaur, D. Dutta, K. G. Thakur
Crystal Structure Of Mycobacterium Tuberculosis Card, An Essential Rna Polymerase Binding Protein, Reveals A Quasidomain-Swapped Dimeric Structural Architecture
Proteins 2013
PubMed-ID: 24115125  |  Reference-DOI: 10.1002/PROT.24419

(-) Compounds

Molecule 1 - RNA POLYMERASE-BINDING TRANSCRIPTION FACTOR CARD
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: ROSETTA(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CARD, MT3689, RV3583C
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Strain: H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1SO47Ligand/IonSULFATE ION
Biological Unit 1 (1, 14)
No.NameCountTypeFull Name
1SO414Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:82 , THR A:83 , ASN A:84 , ARG A:87BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWAREARG A:132BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWAREARG A:59 , ASP A:60 , VAL A:61BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWAREGLY A:63 , GLN A:64 , GLU A:65BINDING SITE FOR RESIDUE SO4 A 204
5AC5SOFTWARETHR A:24 , ARG A:25 , THR A:26 , ARG A:87BINDING SITE FOR RESIDUE SO4 A 205
6AC6SOFTWARELYS A:125 , ARG A:126 , HOH A:369BINDING SITE FOR RESIDUE SO4 A 206
7AC7SOFTWAREVAL A:10 , PRO A:12 , HIS A:14 , GLU A:54 , TYR A:55 , VAL A:56 , ILE A:153BINDING SITE FOR RESIDUE SO4 A 207

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ILU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:28 -Gly A:29

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ILU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ILU)

(-) Exons   (0, 0)

(no "Exon" information available for 4ILU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:165
                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeeeeeeee..eeeeeeeeee.hhheeeeee............hhhhhhhhhhhhhh........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ilu A   2 IFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALADAKAETILDEVLAAAALEHHHHHH 170
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141||     155       165     
                                                                                                                                                                      142|                       
                                                                                                                                                                       147
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ILU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ILU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ILU)

(-) Gene Ontology  (4, 5)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CARD_MYCTO | P9WJG2: 4kbm 4kmc 4mfr
        CARD_MYCTU | P9WJG3: 4kbm 4kmc 4mfr

(-) Related Entries Specified in the PDB File

4mfr