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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE 3-OXOACYL-[ACYL-CARRIER PROTEIN]REDUCTASE FROM ESCHERICHIA COLI STRAIN CFT073 COMPLEXED WITH NADP+ AT 2.1 A RESOLUTION
 
Authors :  J. Hou, T. Osinski, H. Zheng, I. Shumilin, I. Shabalin, S. Shatsman, W. F. Anderson, W. Minor, Center For Structural Genomics Of Infe Diseases (Csgid)
Date :  20 Dec 12  (Deposition) - 09 Jan 13  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Short Chain Dehydrogenase, Fabg, Beta-Ketoacyl-Acyl Carrier Protein Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hou, T. Osinski, H. Zheng, I. Shumilin, I. Shabalin, S. Shatsman, W. F. Anderson, W. Minor, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of A Putative 3-Oxoacyl-[Acyl-Carrier Protein]Reductase From Escherichia Coli Strain Cft073 Complexed With Nadp+ At 2. 1 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE
    Chains: A, B, C, D
    EC Number: 1.1.1.100
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: C1187, NT04EC1225
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 199310
    Strain: CFT073 / ATCC 700928 / UPEC
    Synonym: BETA-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE, FABG

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:9 , SER A:11 , LYS A:12 , GLY A:13 , ILE A:14 , HIS A:32 , TYR A:33 , HIS A:34 , ARG A:35 , ASP A:36 , PHE A:59 , ASP A:60 , VAL A:61 , ASN A:87 , ALA A:88 , GLY A:89 , ILE A:90 , SER A:139 , SER A:140 , TYR A:153 , LYS A:157 , PRO A:183 , GLY A:184 , ILE A:186 , THR A:188 , MET A:190 , ILE A:191 , HOH A:2032 , HOH A:2041 , HOH A:2067 , HOH A:2075 , HOH A:2078 , HOH A:2114 , HOH A:2115BINDING SITE FOR RESIDUE NAP A 1901
2AC2SOFTWAREGLY B:9 , SER B:11 , LYS B:12 , GLY B:13 , ILE B:14 , HIS B:32 , TYR B:33 , HIS B:34 , ARG B:35 , ASP B:36 , PHE B:59 , ASP B:60 , VAL B:61 , ASN B:87 , ALA B:88 , GLY B:89 , ILE B:90 , SER B:139 , TYR B:153 , LYS B:157 , PRO B:183 , GLY B:184 , ILE B:186 , THR B:188 , MET B:190 , HOH B:4020 , HOH B:4041 , HOH B:4048 , HOH B:4058BINDING SITE FOR RESIDUE NAP B 3901
3AC3SOFTWAREGLY C:9 , SER C:11 , LYS C:12 , GLY C:13 , ILE C:14 , HIS C:34 , ARG C:35 , ASP C:36 , PHE C:59 , ASP C:60 , VAL C:61 , ASN C:87 , ALA C:88 , GLY C:89 , ILE C:90 , SER C:139 , SER C:140 , TYR C:153 , LYS C:157 , PRO C:183 , GLY C:184 , ILE C:186 , THR C:188 , MET C:190 , HOH C:3045BINDING SITE FOR RESIDUE NAP C 2901
4AC4SOFTWAREGLY D:9 , SER D:11 , LYS D:12 , GLY D:13 , ILE D:14 , HIS D:32 , TYR D:33 , HIS D:34 , ARG D:35 , ASP D:36 , PHE D:59 , ASP D:60 , VAL D:61 , ASN D:87 , ALA D:88 , GLY D:89 , ILE D:90 , SER D:139 , SER D:140 , TYR D:153 , LYS D:157 , PRO D:183 , GLY D:184 , ILE D:186 , THR D:188 , MET D:190 , ILE D:191 , HOH D:5013 , HOH D:5042 , HOH D:5052 , HOH D:5072 , HOH D:5089 , HOH D:5154 , HOH D:5164BINDING SITE FOR RESIDUE NAP D 4901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IIU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IIU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IIU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IIU)

(-) Exons   (0, 0)

(no "Exon" information available for 4IIU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains d4iiua_ A: automated matches                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..........hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iiu A   1 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEMEESALKEAMSMIPMKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGGML 243
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240   


Chain B from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains d4iiub_ B: automated matches                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..........hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iiu B   2 SRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEMEESALKEAMSMIPMKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGGML 243
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241  


Chain C from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains d4iiuc_ C: automated matches                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4iiu C   2 SRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMMEESALKEAMSMIPMKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGGML 243
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       193       203       213       223       233       243
                                                                                                                                                                                                                      190|                                                  
                                                                                                                                                                                                                       193                                                  


Chain D from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains d4iiud_ D: automated matches                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..........hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iiu D   2 SRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEMEESALKEAMSMIPMKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGGML 243
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IIU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IIU)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4IIU)

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        A0A0H2V833_E | A0A0H2V833: 4iiv

(-) Related Entries Specified in the PDB File

4iin
4iiv
4ij8 RELATED ID: CSGID-IDP91235 RELATED DB: TARGETTRACK