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(-) Description

Title :  CRYSTAL STRUCTURE OF TREPONEMA PALLIDUM TP0796 FLAVIN TRAFFICKING PROTEIN, APO FORM
 
Authors :  D. R. Tomchick, C. A. Brautigam, R. K. Deka, M. V. Norgard
Date :  15 Dec 12  (Deposition) - 27 Feb 13  (Release) - 08 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Bimetal Center, Fad Pyrophosphatase, Flavin Turnover, Treponema Pallidum (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. K. Deka, C. A. Brautigam, W. Z. Liu, D. R. Tomchick, M. V. Norgard
The Tp0796 Lipoprotein Of Treponema Pallidum Is A Bimetal-Dependent Fad Pyrophosphatase With A Potential Role In Flavin Homeostasis.
J. Biol. Chem. V. 288 11106 2013
PubMed-ID: 23447540  |  Reference-DOI: 10.1074/JBC.M113.449975

(-) Compounds

Molecule 1 - THIAMINE BIOSYNTHESIS LIPOPROTEIN APBE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: APBE, TP0796, TP_0796
    Organism Scientific: TREPONEMA PALLIDUM SUBSP. PALLIDUM
    Organism Taxid: 243276
    Strain: NICHOLS

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:162 , ASP A:284 , THR A:288 , HOH A:701 , HOH A:702BINDING SITE FOR RESIDUE MG A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IFU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IFU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IFU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IFU)

(-) Exons   (0, 0)

(no "Exon" information available for 4IFU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh......eeehhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.eeeee.......eeeee...........hhhhhhhhhhhhhhhhh....eeeee..eeeee..ee...ee.eeeeee........eeeeeee..eeeeeee....eeee..eeee................eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee....eeee...hhh.eee.....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ifu A   5 ARVREYSRAELVIGTLCRVRVYSKRPAAEVHAALEEVFTLLQQQEMVLSANRDDSALAALNAQAGSAPVVVDRSLYALLERALFFAEKSGGAFNPALGAVVKLWNIGFDRAAVPDPDALKEALTRCDFRQVHLRAGVSVGAPHTVQLAQAGMQLDLGAIAKGFLADKIVQLLTAHALDSALVDLGGNIFALGLKYGAQRLEWNVGIRDPHGTGQKPALVVSVRDCSVVTSGAYERFFERDGVRYHHIIDPVTGFPAHTDVDSVSIFAPRSTDADALATACFVLGYEKSCALLREFPGVDALFIFPDKRVRASAGIVDRVRVLDARFVLER 340
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194     ||210       220       230       240       250       260       270       280       290       300       310       320       330       340
                                                                                                                                                                                                                             200|                                                                                                                                     
                                                                                                                                                                                                                              207
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IFU)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (5, 5)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        APBE_TREPA | O83774: 4ifw 4ifx 4ifz 4ig1 4xdr 4xdt 4xdu

(-) Related Entries Specified in the PDB File

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