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(-) Description

Title :  CRYSTAL STRUCTURE OF TREPONEMA PALLIDUM TP0796 FLAVIN TRAFFICKING PROTEIN, MG(II)-AMP PRODUCT BOUND FORM
 
Authors :  D. R. Tomchick, C. A. Brautigam, R. K. Deka, M. V. Norgard
Date :  15 Dec 12  (Deposition) - 27 Feb 13  (Release) - 08 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.43
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Bimetal Center, Fad Pyrophosphatase, Flavin Turnover, Treponema Pallidum (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. K. Deka, C. A. Brautigam, W. Z. Liu, D. R. Tomchick, M. V. Norgard
The Tp0796 Lipoprotein Of Treponema Pallidum Is A Bimetal-Dependent Fad Pyrophosphatase With A Potential Role In Flavin Homeostasis.
J. Biol. Chem. V. 288 11106 2013
PubMed-ID: 23447540  |  Reference-DOI: 10.1074/JBC.M113.449975

(-) Compounds

Molecule 1 - THIAMINE BIOSYNTHESIS LIPOPROTEIN APBE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: APBE, TP0796, TP_0796
    Organism Scientific: TREPONEMA PALLIDUM SUBSP. PALLIDUM
    Organism Taxid: 243276
    Strain: NICHOLS

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2AMP1Ligand/IonADENOSINE MONOPHOSPHATE
3MG2Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:96 , PHE A:97 , ASN A:98 , LEU A:101 , ASP A:159 , GLY A:161 , ALA A:162 , SER A:240 , HIS A:256 , ILE A:257 , ILE A:258 , ASP A:284 , THR A:288 , MG A:502 , MG A:503 , HOH A:601 , HOH A:603 , HOH A:604 , HOH A:609 , HOH A:683 , HOH A:701 , HOH A:735 , HOH A:851BINDING SITE FOR RESIDUE AMP A 501
2AC2SOFTWAREALA A:162 , ASP A:284 , THR A:288 , AMP A:501 , MG A:503BINDING SITE FOR RESIDUE MG A 502
3AC3SOFTWAREASP A:284 , AMP A:501 , MG A:502 , HOH A:601 , HOH A:602 , HOH A:603 , HOH A:604BINDING SITE FOR RESIDUE MG A 503
4AC4SOFTWARESER A:27 , LYS A:28 , ALA A:180 , LEU A:181 , ASP A:182 , HOH A:613BINDING SITE FOR RESIDUE ACT A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IG1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IG1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IG1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IG1)

(-) Exons   (0, 0)

(no "Exon" information available for 4IG1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.....eeehhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.eeeee.......eeeee...........hhhhhhhhhhhhhhhhh....eeeee..eeeee..ee...ee.eeeee...........eeeee..eeeeeee....eeee..eeee................eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee....eeee...hhh.eee.....ee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ig1 A   7 VREYSRAELVIGTLCRVRVYSKRPAAEVHAALEEVFTLLQQQEMVLSANRDDSALAALNAQAGSAPVVVDRSLYALLERALFFAEKSGGAFNPALGAVVKLWNIGFDRAAVPDPDALKEALTRCDFRQVHLRAGVSVGAPHTVQLAQAGMQLDLGAIAKGFLADKIVQLLTAHALDSALVDLGGNIFALGLKYGAQRLEWNVGIRDPHGTGQKPALVVSVRDCSVVTSGAYERFFERDGVRYHHIIDPVTGFPAHTDVDSVSIFAPRSTDADALATACFVLGYEKSCALLREFPGVDALFIFPDKRVRASAGIVDRVRVLDARFVLER 340
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196   ||  212       222       232       242       252       262       272       282       292       302       312       322       332        
                                                                                                                                                                                                                           200|                                                                                                                                     
                                                                                                                                                                                                                            207
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IG1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IG1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IG1)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        APBE_TREPA | O83774: 4ifu 4ifw 4ifx 4ifz 4xdr 4xdt 4xdu

(-) Related Entries Specified in the PDB File

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