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(-) Description

Title :  CRYSTAL STRUCTURE OF A GLUTATHIONE TRANSFERASE FAMILY MEMBER FROM PSEUDOMONAS FLUORESCENS PF-5, TARGET EFI-900011, WITH BOUND GLUTATHIONE SULFINIC ACID (GSO2H) AND ACETATE
 
Authors :  M. W. Vetting, J. M. Sauder, L. L. Morisco, S. R. Wasserman, S. Sojitra, H S. K. Burley, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (E
Date :  11 Dec 12  (Deposition) - 26 Dec 12  (Release) - 06 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gst, Glutathione S-Transferase, Enzyme Function Initiative, Efi, Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, J. M. Sauder, L. L. Morisco, S. R. Wasserman, S. Sojitra, H. J. Imker, S. K. Burley, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of A Glutathione Transferase Family Membe From Pseudomonas Fluorescens Pf-5, Target Efi-900011, With Bound Glutathione Sulfinic Acid (Gso2H) And Acetate
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE-LIKE PROTEIN YIBF
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: YIBF, PFL_5710
    Organism Scientific: PSEUDOMONAS FLUORESCENS
    Organism Taxid: 1218948
    Strain: PF-5

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2GOL1Ligand/IonGLYCEROL
3GSF1Ligand/IonL-GAMMA-GLUTAMYL-3-SULFINO-L-ALANYLGLYCINE
4MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:11 , PRO A:54 , ASP A:66 , SER A:67 , HOH A:411 , HOH A:711BINDING SITE FOR RESIDUE ACT A 301
2AC2SOFTWARETYR A:113 , HOH A:590 , HOH A:628 , HOH A:708BINDING SITE FOR RESIDUE ACT A 302
3AC3SOFTWARELEU A:35 , TYR A:113 , TYR A:167 , ARG A:171 , HOH A:500 , HOH A:591BINDING SITE FOR RESIDUE ACT A 303
4AC4SOFTWAREARG A:132 , ALA A:151 , SER A:152 , HIS A:153 , PHE A:154 , ASP A:174 , HOH A:439 , HOH A:484 , HOH A:491 , HOH A:568 , HOH A:648BINDING SITE FOR RESIDUE GOL A 304
5AC5SOFTWARETYR B:167 , ARG B:171 , GSF B:302 , HOH B:625 , HOH B:631BINDING SITE FOR RESIDUE ACT B 301
6AC6SOFTWARELYS A:134 , SER B:9 , PRO B:10 , TYR B:11 , LEU B:35 , SER B:36 , PRO B:37 , GLY B:51 , LYS B:52 , ILE B:53 , PRO B:54 , ASP B:66 , SER B:67 , TYR B:113 , ACT B:301 , HOH B:401 , HOH B:403 , HOH B:419 , HOH B:421 , HOH B:435 , HOH B:484 , HOH B:487 , HOH B:515 , HOH B:544 , HOH B:688BINDING SITE FOR RESIDUE GSF B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ID0)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ile A:53 -Pro A:54
2Tyr A:65 -Asp A:66
3Ile B:53 -Pro B:54
4Tyr B:65 -Asp B:66

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ID0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ID0)

(-) Exons   (0, 0)

(no "Exon" information available for 4ID0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh.hhh.eeeee......................eee.....ee.hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4id0 A   0 SLTLFHNPASPYVRKVmVLLHETGQLNRVALQASQLSPVAPDAALNQDNPLGKIPALRLDNGQVLYDSRVILDYLDQQHVGNPLIPRDGSARWRRLTLAALADGImDASVLVRYELALRAPEKHWEQWLDGQRDKIRRALAVLEAEAIAELASHFDIAAISVACALGYLDFRHPDLEWRQDHPQLAAWYFEISQRPSmLATRPP 203
                                     9      | 19        29        39        49        59        69        79        89        99     | 109       119       129       139       149       159       169       179       189       199    
                                           16-MSE                                                                                  105-MSE                                                                                     197-MSE  


Chain B from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh.hhh.eeeee........hhhhhhhh......eee.....ee.hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4id0 B   0 SLTLFHNPASPYVRKVmVLLHETGQLNRVALQASQLSPVAPDAALNQDNPLGKIPALRLDNGQVLYDSRVILDYLDQQHVGNPLIPRDGSARWRRLTLAALADGImDASVLVRYELALRAPEKHWEQWLDGQRDKIRRALAVLEAEAIAELASHFDIAAISVACALGYLDFRHPDLEWRQDHPQLAAWYFEISQRPSmLATRPP 203
                                     9      | 19        29        39        49        59        69        79        89        99     | 109       119       129       139       149       159       169       179       189       199    
                                           16-MSE                                                                                  105-MSE                                                                                     197-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ID0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ID0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ID0)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ile A:53 - Pro A:54   [ RasMol ]  
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    Tyr A:65 - Asp A:66   [ RasMol ]  
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 Related Entries

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        Q4K4R5_PSEF5 | Q4K4R5: 4ibp 4iji

(-) Related Entries Specified in the PDB File

4ibp