4HWH - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF ATBAG4

Authors :   Y. Shen, S. Fang

Date :   07 Nov 12 (Deposition) - 29 May 13 (Release) - 29 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D,E
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)

Keywords :   Three Helix Bundle, Co-Chaperone, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Fang, L. Li, B. Cui, S. Men, Y. Shen, X. Yang
Structural Insight Into Plant Programmed Cell Death Mediate By Bag Proteins In Arabidopsis Thaliana.
Acta Crystallogr. , Sect. D V. 69 934 2013
PubMed-ID: 23695238 | Reference-DOI: 10.1107/S0907444913003624

Molecule 1 - BAG FAMILY MOLECULAR CHAPERONE REGULATOR 4
	Chains	:	A, B, C, D, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	BAG DOMAIN (UNP RESIDUES 138-223)
	Gene	:	AT3G51780, ATBAG4, ATEM1.3, BAG4
	Organism Common	:	MOUSE-EAR CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Synonym	:	BCL-2-ASSOCIATED ATHANOGENE 4

		1	2	3	4	5
Asymmetric Unit	:	A	B	C	D	E
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 7)

No.	Name	Count	Type	Full Name
1	ACT	4	Ligand/Ion	ACETATE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	MLA	2	Ligand/Ion	MALONIC ACID

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	GOL	-1	Ligand/Ion	GLYCEROL
3	MLA	1	Ligand/Ion	MALONIC ACID

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	MLA	-1	Ligand/Ion	MALONIC ACID

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	GOL	-1	Ligand/Ion	GLYCEROL
3	MLA	1	Ligand/Ion	MALONIC ACID

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	GOL	-1	Ligand/Ion	GLYCEROL
3	MLA	-1	Ligand/Ion	MALONIC ACID

Biological Unit 5 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	GOL	-1	Ligand/Ion	GLYCEROL
3	MLA	-1	Ligand/Ion	MALONIC ACID

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:148 , LEU A:152 , ARG A:155 , ARG D:183 , LYS D:187	BINDING SITE FOR RESIDUE MLA A 301
2	AC2	SOFTWARE	SER A:153 , ARG A:207 , HOH A:412 , HOH E:451	BINDING SITE FOR RESIDUE ACT A 302
3	AC3	SOFTWARE	ASN A:164 , ARG B:155 , ARG B:172 , GLU B:173 , GLY C:166	BINDING SITE FOR RESIDUE GOL B 301
4	AC4	SOFTWARE	HOH B:420 , ARG C:155 , ALA C:162	BINDING SITE FOR RESIDUE MLA C 301
5	AC5	SOFTWARE	ARG B:155 , ASN C:164 , ARG C:221 , HOH C:412	BINDING SITE FOR RESIDUE ACT C 302
6	AC6	SOFTWARE	GLN D:212 , ASP D:216	BINDING SITE FOR RESIDUE ACT D 301
7	AC7	SOFTWARE	ASN A:143 , GLY A:147 , LYS E:151	BINDING SITE FOR RESIDUE ACT E 301

(no "SS Bond" information available for 4HWH)

(no "Cis Peptide Bond" information available for 4HWH)

(no "SAP(SNP)/Variant" information available for 4HWH)

(no "PROSITE Motif" information available for 4HWH)

(no "Exon" information available for 4HWH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:84
                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 4hwh A 137 LAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLKLDGIEAAKVQRKAEVRRIQNLQEAVDKLKARCS 223
                                   146       156       166       176       186      |199       209       219    
                                                                                  193|                          
                                                                                   197

Chain B from PDB  Type:PROTEIN  Length:86
                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 4hwh B 138 AIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCS 223
                                   147       157       167       177       187       197       207       217

Chain C from PDB  Type:PROTEIN  Length:86
                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 4hwh C 136 ALAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLKLDGIEGDAKVQRKAEVRRIQNLQEAVDKLKARCS 223
                                   145       155       165       175       185      |197       207       217      
                                                                                  192|                            
                                                                                   195

Chain D from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 4hwh D 137 LAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCS 223
                                   146       156       166       176       186       196       206       216

Chain E from PDB  Type:PROTEIN  Length:88
                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 4hwh E 136 ALAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLKLDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCS 223
                                   145       155       165       175       185       195       205       215

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4HWH)

(no "CATH Domain" information available for 4HWH)

(no "Pfam Domain" information available for 4HWH)

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4hwh)

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		Biological Unit 5	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (3, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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