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(-) Description

Title :  STRUCTURE OF TRUNCATED (DELTA8C) S100A4
 
Authors :  U. A. Ramagopal, N. G. Dulyaninova, P. R. Kumar, S. C. Almo, A. R. Bresnic York Structural Genomics Research Consortium (Nysgrc)
Date :  31 Oct 12  (Deposition) - 30 Jan 13  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. A. Ramagopal, N. G. Dulyaninova, P. R. Kumar, S. C. Almo, A. R. Bresnick
Structure Of Truncated (Delta8C) S100A4
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN S100-A4
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23A
    Expression System Strain: BL(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-93
    Gene: CAPL, MTS1, S100A4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CALVASCULIN, METASTASIN, PLACENTAL CALCIUM-BINDING PROTEIN, PROTEIN MTS1, S100 CALCIUM-BINDING PROTEIN A4

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:20 , GLU A:23 , ASP A:25 , LYS A:28 , GLU A:33 , HOH A:201BINDING SITE FOR RESIDUE CA A 101
2AC2SOFTWAREASP A:63 , ASN A:65 , ASP A:67 , GLU A:69 , GLU A:74 , HOH A:202BINDING SITE FOR RESIDUE CA A 102
3AC3SOFTWARESER B:20 , GLU B:23 , ASP B:25 , LYS B:28 , GLU B:33BINDING SITE FOR RESIDUE CA B 101
4AC4SOFTWAREASP B:63 , ASN B:65 , ASP B:67 , GLU B:69 , GLU B:74 , HOH B:202BINDING SITE FOR RESIDUE CA B 102
5AC5SOFTWARESER C:20 , GLU C:23 , ASP C:25 , LYS C:28 , GLU C:33BINDING SITE FOR RESIDUE CA C 101
6AC6SOFTWAREASP C:63 , ASN C:65 , ASP C:67 , GLU C:69 , GLU C:74 , HOH C:202BINDING SITE FOR RESIDUE CA C 102
7AC7SOFTWARESER D:20 , GLU D:23 , ASP D:25 , LYS D:28 , GLU D:33BINDING SITE FOR RESIDUE CA D 101
8AC8SOFTWAREASP D:63 , ASN D:65 , ASP D:67 , GLU D:69 , GLU D:74BINDING SITE FOR RESIDUE CA D 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HSZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HSZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HSZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HSZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4HSZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:90
                                                                                                                         
               SCOP domains d4hsza_ A: Calcyclin (S100)                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  4hsz A  3 CPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEG 92
                                    12        22        32        42        52        62        72        82        92


Chain B from PDB  Type:PROTEIN  Length:90
                                                                                                                         
               SCOP domains d4hszb_ B: Calcyclin (S100)                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  4hsz B  3 CPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEG 92
                                    12        22        32        42        52        62        72        82        92


Chain C from PDB  Type:PROTEIN  Length:90
                                                                                                                         
               SCOP domains d4hszc_ C: Calcyclin (S100)                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  4hsz C  3 CPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEG 92
                                    12        22        32        42        52        62        72        82        92


Chain D from PDB  Type:PROTEIN  Length:90
                                                                                                                         
               SCOP domains d4hszd_ D: Calcyclin (S100)                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  4hsz D  3 CPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEG 92
                                    12        22        32        42        52        62        72        82        92
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HSZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HSZ)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)

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  S10A4_HUMAN | P26447
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        S10A4_HUMAN | P26447: 1m31 2lnk 2mrd 2q91 3c1v 3cga 3ko0 3m0w 3zwh 4cfq 4cfr 4eto 5lpu

(-) Related Entries Specified in the PDB File

2q91 RELATED ID: NYSGRC-012776 RELATED DB: TARGETTRACK