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(-) Description

Title :  STRUCTURE OF S100A4 WITH PCP
 
Authors :  U. A. Ramagopal, N. G. Dulyaninova, S. C. Almo, A. R. Bresnick
Date :  03 Mar 10  (Deposition) - 12 May 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J  (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  C,D  (1x)
Biol. Unit 4:  E,F  (1x)
Biol. Unit 5:  G,H  (1x)
Biol. Unit 6:  I,J  (1x)
Keywords :  Mts1, S100 Calcium-Binding Protein A4, S100A4, Metastasin, Calcium Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  U. A. Ramagopal, N. G. Dulyaninova, S. C. Almo, A. R. Bresnick
Structure Of S100A4 With Pcp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN S100-A4
    ChainsA, B, C, D, E, F, G, H, I, J
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET23A
    Expression System StrainBL(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneCAPL, MTS1, S100A4
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymS100 CALCIUM-BINDING PROTEIN A4, METASTASIN, PROTEIN MTS1, PLACENTAL CALCIUM-BINDING PROTEIN, CALVASCULIN

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit ABCDEFGHIJ
Biological Unit 1 (1x)ABCDEFGHIJ
Biological Unit 2 (1x)AB        
Biological Unit 3 (1x)  CD      
Biological Unit 4 (1x)    EF    
Biological Unit 5 (1x)      GH  
Biological Unit 6 (1x)        IJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 34)

Asymmetric Unit (3, 34)
No.NameCountTypeFull Name
1CA20Ligand/IonCALCIUM ION
2DIO2Ligand/Ion1,4-DIETHYLENE DIOXIDE
3P7712Ligand/Ion2-CHLORO-10-[3-(4-METHYLPIPERAZIN-1-YL)PROPYL]-10H-PHENOTHIAZINE
Biological Unit 1 (2, 14)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DIO2Ligand/Ion1,4-DIETHYLENE DIOXIDE
3P7712Ligand/Ion2-CHLORO-10-[3-(4-METHYLPIPERAZIN-1-YL)PROPYL]-10H-PHENOTHIAZINE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DIO1Ligand/Ion1,4-DIETHYLENE DIOXIDE
3P773Ligand/Ion2-CHLORO-10-[3-(4-METHYLPIPERAZIN-1-YL)PROPYL]-10H-PHENOTHIAZINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DIO-1Ligand/Ion1,4-DIETHYLENE DIOXIDE
3P772Ligand/Ion2-CHLORO-10-[3-(4-METHYLPIPERAZIN-1-YL)PROPYL]-10H-PHENOTHIAZINE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DIO-1Ligand/Ion1,4-DIETHYLENE DIOXIDE
3P772Ligand/Ion2-CHLORO-10-[3-(4-METHYLPIPERAZIN-1-YL)PROPYL]-10H-PHENOTHIAZINE
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DIO-1Ligand/Ion1,4-DIETHYLENE DIOXIDE
3P772Ligand/Ion2-CHLORO-10-[3-(4-METHYLPIPERAZIN-1-YL)PROPYL]-10H-PHENOTHIAZINE
Biological Unit 6 (2, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DIO1Ligand/Ion1,4-DIETHYLENE DIOXIDE
3P773Ligand/Ion2-CHLORO-10-[3-(4-METHYLPIPERAZIN-1-YL)PROPYL]-10H-PHENOTHIAZINE

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:10 , PHE B:89 , GLU I:6 , ASP I:10 , CYS J:86BINDING SITE FOR RESIDUE P77 A 203
02AC2SOFTWARESER A:20 , GLU A:23 , ASP A:25 , LYS A:28 , GLU A:33BINDING SITE FOR RESIDUE CA A 201
03AC3SOFTWAREASP A:63 , ASN A:65 , ASP A:67 , GLU A:69 , GLU A:74BINDING SITE FOR RESIDUE CA A 202
04AC4SOFTWAREMET A:85 , PHE C:89BINDING SITE FOR RESIDUE DIO A 102
05AC5SOFTWAREPHE A:89 , ASP B:10 , SER B:14 , CYS C:86 , PHE C:89 , GLU D:6 , P77 D:203BINDING SITE FOR RESIDUE P77 B 203
06AC6SOFTWARESER B:20 , GLU B:23 , ASP B:25 , LYS B:28 , GLU B:33 , HOH B:103BINDING SITE FOR RESIDUE CA B 201
07AC7SOFTWAREASP B:63 , ASN B:65 , ASP B:67 , GLU B:69 , GLU B:74 , HOH B:102BINDING SITE FOR RESIDUE CA B 202
08AC8SOFTWAREMET B:85 , CYS B:86 , GLU B:88 , PHE B:93 , P77 I:203 , PHE J:89 , PHE J:93BINDING SITE FOR RESIDUE P77 B 204
09AC9SOFTWAREASP C:10 , SER C:14 , PHE D:89 , PHE E:45 , CYS E:86 , GLU F:6 , ASP F:10 , P77 F:203BINDING SITE FOR RESIDUE P77 C 203
10BC1SOFTWARESER C:20 , GLY C:21 , LYS C:22 , GLU C:23 , ASP C:25 , GLU C:33BINDING SITE FOR RESIDUE CA C 201
11BC2SOFTWAREASP C:63 , ASN C:65 , ASP C:67 , GLU C:69 , GLU C:74BINDING SITE FOR RESIDUE CA C 202
12BC3SOFTWARESER A:44 , CYS A:86 , GLU B:6 , P77 B:203 , PHE C:89 , ASP D:10 , SER D:14BINDING SITE FOR RESIDUE P77 D 203
13BC4SOFTWARESER D:20 , GLU D:23 , ASP D:25 , LYS D:28 , GLU D:33BINDING SITE FOR RESIDUE CA D 201
14BC5SOFTWAREASP D:63 , ASN D:65 , ASP D:67 , GLU D:69 , GLU D:74BINDING SITE FOR RESIDUE CA D 202
15BC6SOFTWAREASP E:10 , SER E:14 , PHE F:89 , CYS G:86 , GLU H:6 , P77 H:203BINDING SITE FOR RESIDUE P77 E 203
16BC7SOFTWARESER E:20 , LYS E:28 , LEU E:29 , ASN E:30 , GLU E:33BINDING SITE FOR RESIDUE CA E 201
17BC8SOFTWAREASP E:63 , SER E:64 , ASN E:65 , ASP E:67 , GLU E:69BINDING SITE FOR RESIDUE CA E 202
18BC9SOFTWAREGLU C:6 , ASP C:10 , P77 C:203 , SER D:44 , CYS D:86 , PHE E:89 , ASP F:10 , SER F:14BINDING SITE FOR RESIDUE P77 F 203
19CC1SOFTWARESER F:20 , GLU F:23 , ASP F:25 , LYS F:28 , GLU F:33BINDING SITE FOR RESIDUE CA F 201
20CC2SOFTWAREASP F:63 , ASN F:65 , ASP F:67 , GLU F:69 , GLU F:74BINDING SITE FOR RESIDUE CA F 202
21CC3SOFTWAREASP G:10 , PHE H:89 , SER I:44 , CYS I:86 , GLU J:6 , P77 J:203BINDING SITE FOR RESIDUE P77 G 203
22CC4SOFTWARESER G:20 , GLU G:23 , ASP G:25 , LYS G:28 , GLU G:33BINDING SITE FOR RESIDUE CA G 201
23CC5SOFTWAREASP G:63 , ASN G:65 , ASP G:67 , GLU G:69 , GLU G:74BINDING SITE FOR RESIDUE CA G 202
24CC6SOFTWAREASP E:10 , P77 E:203 , PHE F:45 , CYS F:86 , PHE G:89 , ASP H:10 , SER H:14BINDING SITE FOR RESIDUE P77 H 203
25CC7SOFTWARESER H:20 , GLU H:23 , ASP H:25 , LYS H:28 , GLU H:33 , HOH H:102BINDING SITE FOR RESIDUE CA H 201
26CC8SOFTWAREASP H:63 , ASN H:65 , ASP H:67 , GLU H:69 , GLU H:74BINDING SITE FOR RESIDUE CA H 202
27CC9SOFTWAREGLU A:6 , ASP A:10 , SER B:44 , CYS B:86 , P77 B:204 , ASP I:10 , SER I:14 , PHE J:89BINDING SITE FOR RESIDUE P77 I 203
28DC1SOFTWAREPHE H:89 , PHE H:90 , SER I:44 , PHE I:45 , GLY I:47 , MET I:85 , CYS I:86BINDING SITE FOR RESIDUE P77 I 204
29DC2SOFTWARESER I:20 , GLU I:23 , ASP I:25 , LYS I:28 , GLU I:33BINDING SITE FOR RESIDUE CA I 201
30DC3SOFTWAREASP I:63 , ASN I:65 , ASP I:67 , GLU I:69 , GLU I:74 , HOH I:102BINDING SITE FOR RESIDUE CA I 202
31DC4SOFTWAREGLU G:6 , P77 G:203 , SER H:44 , CYS H:86 , PHE H:89 , PHE I:89 , ASP J:10BINDING SITE FOR RESIDUE P77 J 203
32DC5SOFTWARESER J:20 , GLU J:23 , ASP J:25 , LYS J:28 , GLU J:33 , HOH J:103BINDING SITE FOR RESIDUE CA J 201
33DC6SOFTWAREASP J:63 , ASN J:65 , ASP J:67 , GLU J:69 , GLU J:74 , HOH J:102BINDING SITE FOR RESIDUE CA J 202
34DC7SOFTWAREPHE B:89 , MET J:85 , HOH J:105BINDING SITE FOR RESIDUE DIO J 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3M0W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3M0W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3M0W)

(-) PROSITE Motifs  (3, 30)

Asymmetric Unit (3, 30)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.S10A4_HUMAN50-85
 
 
 
 
 
 
 
 
 
  10A:50-85
B:50-85
C:51-85
D:51-85
E:50-85
F:51-85
G:52-85
H:50-85
I:50-85
J:50-85
2S100_CABPPS00303 S-100/ICaBP type calcium binding protein signature.S10A4_HUMAN58-79
 
 
 
 
 
 
 
 
 
  10A:58-79
B:58-79
C:58-79
D:58-79
E:58-79
F:58-79
G:58-79
H:58-79
I:58-79
J:58-79
3EF_HAND_1PS00018 EF-hand calcium-binding domain.S10A4_HUMAN63-75
 
 
 
 
 
 
 
 
 
  10A:63-75
B:63-75
C:63-75
D:63-75
E:63-75
F:63-75
G:63-75
H:63-75
I:63-75
J:63-75
Biological Unit 1 (3, 30)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.S10A4_HUMAN50-85
 
 
 
 
 
 
 
 
 
  10A:50-85
B:50-85
C:51-85
D:51-85
E:50-85
F:51-85
G:52-85
H:50-85
I:50-85
J:50-85
2S100_CABPPS00303 S-100/ICaBP type calcium binding protein signature.S10A4_HUMAN58-79
 
 
 
 
 
 
 
 
 
  10A:58-79
B:58-79
C:58-79
D:58-79
E:58-79
F:58-79
G:58-79
H:58-79
I:58-79
J:58-79
3EF_HAND_1PS00018 EF-hand calcium-binding domain.S10A4_HUMAN63-75
 
 
 
 
 
 
 
 
 
  10A:63-75
B:63-75
C:63-75
D:63-75
E:63-75
F:63-75
G:63-75
H:63-75
I:63-75
J:63-75
Biological Unit 2 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.S10A4_HUMAN50-85
 
 
 
 
 
 
 
 
 
  2A:50-85
B:50-85
-
-
-
-
-
-
-
-
2S100_CABPPS00303 S-100/ICaBP type calcium binding protein signature.S10A4_HUMAN58-79
 
 
 
 
 
 
 
 
 
  2A:58-79
B:58-79
-
-
-
-
-
-
-
-
3EF_HAND_1PS00018 EF-hand calcium-binding domain.S10A4_HUMAN63-75
 
 
 
 
 
 
 
 
 
  2A:63-75
B:63-75
-
-
-
-
-
-
-
-
Biological Unit 3 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.S10A4_HUMAN50-85
 
 
 
 
 
 
 
 
 
  2-
-
C:51-85
D:51-85
-
-
-
-
-
-
2S100_CABPPS00303 S-100/ICaBP type calcium binding protein signature.S10A4_HUMAN58-79
 
 
 
 
 
 
 
 
 
  2-
-
C:58-79
D:58-79
-
-
-
-
-
-
3EF_HAND_1PS00018 EF-hand calcium-binding domain.S10A4_HUMAN63-75
 
 
 
 
 
 
 
 
 
  2-
-
C:63-75
D:63-75
-
-
-
-
-
-
Biological Unit 4 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.S10A4_HUMAN50-85
 
 
 
 
 
 
 
 
 
  2-
-
-
-
E:50-85
F:51-85
-
-
-
-
2S100_CABPPS00303 S-100/ICaBP type calcium binding protein signature.S10A4_HUMAN58-79
 
 
 
 
 
 
 
 
 
  2-
-
-
-
E:58-79
F:58-79
-
-
-
-
3EF_HAND_1PS00018 EF-hand calcium-binding domain.S10A4_HUMAN63-75
 
 
 
 
 
 
 
 
 
  2-
-
-
-
E:63-75
F:63-75
-
-
-
-
Biological Unit 5 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.S10A4_HUMAN50-85
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
G:52-85
H:50-85
-
-
2S100_CABPPS00303 S-100/ICaBP type calcium binding protein signature.S10A4_HUMAN58-79
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
G:58-79
H:58-79
-
-
3EF_HAND_1PS00018 EF-hand calcium-binding domain.S10A4_HUMAN63-75
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
G:63-75
H:63-75
-
-
Biological Unit 6 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.S10A4_HUMAN50-85
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
-
I:50-85
J:50-85
2S100_CABPPS00303 S-100/ICaBP type calcium binding protein signature.S10A4_HUMAN58-79
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
-
I:58-79
J:58-79
3EF_HAND_1PS00018 EF-hand calcium-binding domain.S10A4_HUMAN63-75
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
-
I:63-75
J:63-75

(-) Exons   (2, 20)

Asymmetric Unit (2, 20)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003687162aENSE00001928713chr1:153518361-153518229133S10A4_HUMAN-00--
1.4cENST000003687164cENSE00002173615chr1:153517285-153517130156S10A4_HUMAN1-474710A:2-47
B:2-46
C:3-47
D:3-46
E:2-47
F:2-46
G:2-47
H:2-47
I:2-47
J:2-46
46
45
45
44
46
45
46
46
46
45
1.5cENST000003687165cENSE00001447832chr1:153516399-153516089311S10A4_HUMAN48-1015410A:48-91
B:50-94
C:51-93
D:51-92
E:48-91
F:51-91
G:52-91
H:48-94
I:48-94
J:50-93
44
45
43
42
44
41
40
47
47
44

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:90
 aligned with S10A4_HUMAN | P26447 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:90
                                    11        21        31        41        51        61        71        81        91
           S10A4_HUMAN    2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFE 91
               SCOP domains d3m0wa_ A: Calcyclin (S100)                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: A:50-85             ------ PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: A:58-7------------ PROSITE (2)
                PROSITE (3) -------------------------------------------------------------EF_HAND_1    ---------------- PROSITE (3)
               Transcript 1 Exon 1.4c  PDB: A:2-47 UniProt: 1-47          Exon 1.5c  PDB: A:48-91 UniProt: 48-101      Transcript 1
                  3m0w A  2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFE 91
                                    11        21        31        41        51        61        71        81        91

Chain B from PDB  Type:PROTEIN  Length:90
 aligned with S10A4_HUMAN | P26447 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:93
                                    11        21        31        41        51        61        71        81        91   
           S10A4_HUMAN    2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFP 94
               SCOP domains d3m0wb_ B: Calcyclin (S100)                                                                   SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhh....---.hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: B:50-85             --------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: B:58-7--------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------EF_HAND_1    ------------------- PROSITE (3)
               Transcript 1 Exon 1.4c  PDB: B:2-46 UniProt: 1-47          Exon 1.5c  PDB: B:50-94 UniProt: 48-101         Transcript 1
                  3m0w B  2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFL---TDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFP 94
                                    11        21        31        41    |   51        61        71        81        91   
                                                                       46  50                                            

Chain C from PDB  Type:PROTEIN  Length:88
 aligned with S10A4_HUMAN | P26447 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:91
                                    12        22        32        42        52        62        72        82        92 
           S10A4_HUMAN    3 CPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGF 93
               SCOP domains d3m0wc_ C: Calcyclin (S100)                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhh.....---hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: C:51-85             -------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: C:58-7-------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------EF_HAND_1    ------------------ PROSITE (3)
               Transcript 1 Exon 1.4c  PDB: C:3-47 UniProt: 1-47         Exon 1.5c  PDB: C:51-93 UniProt: 48-101        Transcript 1
                  3m0w C  3 CPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLG---DEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGF 93
                                    12        22        32        42    |   52        62        72        82        92 
                                                                       47  51                                          

Chain D from PDB  Type:PROTEIN  Length:86
 aligned with S10A4_HUMAN | P26447 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:90
                                    12        22        32        42        52        62        72        82        92
           S10A4_HUMAN    3 CPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEG 92
               SCOP domains d3m0wd_ D: Calcyclin (S100)                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhh....----.hhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -----------------------------------------------EF_HAND_2  PDB: D:51-85             ------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------S100_CABP  PDB: D:58-7------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------EF_HAND_1    ----------------- PROSITE (3)
               Transcript 1 Exon 1.4c  PDB: D:3-46 UniProt: 1-47         Exon 1.5c  PDB: D:51-92 UniProt: 48-101       Transcript 1
                  3m0w D  3 CPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFL----DEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEG 92
                                    12        22        32        42   |    52        62        72        82        92
                                                                      46   51                                         

Chain E from PDB  Type:PROTEIN  Length:90
 aligned with S10A4_HUMAN | P26447 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:90
                                    11        21        31        41        51        61        71        81        91
           S10A4_HUMAN    2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFE 91
               SCOP domains d3m0we_ E: Calcyclin (S100)                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: E:50-85             ------ PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: E:58-7------------ PROSITE (2)
                PROSITE (3) -------------------------------------------------------------EF_HAND_1    ---------------- PROSITE (3)
               Transcript 1 Exon 1.4c  PDB: E:2-47 UniProt: 1-47          Exon 1.5c  PDB: E:48-91 UniProt: 48-101      Transcript 1
                  3m0w E  2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFE 91
                                    11        21        31        41        51        61        71        81        91

Chain F from PDB  Type:PROTEIN  Length:86
 aligned with S10A4_HUMAN | P26447 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:90
                                    11        21        31        41        51        61        71        81        91
           S10A4_HUMAN    2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFE 91
               SCOP domains d3m0wf_ F: Calcyclin (S100)                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhh....----hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: F:51-85             ------ PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: F:58-7------------ PROSITE (2)
                PROSITE (3) -------------------------------------------------------------EF_HAND_1    ---------------- PROSITE (3)
               Transcript 1 Exon 1.4c  PDB: F:2-46 UniProt: 1-47          Exon 1.5c  PDB: F:51-91 UniProt: 48-101      Transcript 1
                  3m0w F  2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFL----DEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFE 91
                                    11        21        31        41    |   51        61        71        81        91
                                                                       46   51                                        

Chain G from PDB  Type:PROTEIN  Length:86
 aligned with S10A4_HUMAN | P26447 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:90
                                    11        21        31        41        51        61        71        81        91
           S10A4_HUMAN    2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFE 91
               SCOP domains d3m0wg_ G: Calcyclin (S100)                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhh.....----hhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: G:52-85             ------ PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: G:58-7------------ PROSITE (2)
                PROSITE (3) -------------------------------------------------------------EF_HAND_1    ---------------- PROSITE (3)
               Transcript 1 Exon 1.4c  PDB: G:2-47 UniProt: 1-47          Exon 1.5c  PDB: G:52-91 UniProt: 48-101      Transcript 1
                  3m0w G  2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLG----EAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFE 91
                                    11        21        31        41     |   -|       61        71        81        91
                                                                        47   52                                       

Chain H from PDB  Type:PROTEIN  Length:93
 aligned with S10A4_HUMAN | P26447 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:93
                                    11        21        31        41        51        61        71        81        91   
           S10A4_HUMAN    2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFP 94
               SCOP domains d3m0wh_ H: Calcyclin (S100)                                                                   SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: H:50-85             --------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: H:58-7--------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------EF_HAND_1    ------------------- PROSITE (3)
               Transcript 1 Exon 1.4c  PDB: H:2-47 UniProt: 1-47          Exon 1.5c  PDB: H:48-94 UniProt: 48-101         Transcript 1
                  3m0w H  2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFP 94
                                    11        21        31        41        51        61        71        81        91   

Chain I from PDB  Type:PROTEIN  Length:93
 aligned with S10A4_HUMAN | P26447 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:93
                                    11        21        31        41        51        61        71        81        91   
           S10A4_HUMAN    2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFP 94
               SCOP domains d3m0wi_ I: Calcyclin (S100)                                                                   SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: I:50-85             --------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: I:58-7--------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------EF_HAND_1    ------------------- PROSITE (3)
               Transcript 1 Exon 1.4c  PDB: I:2-47 UniProt: 1-47          Exon 1.5c  PDB: I:48-94 UniProt: 48-101         Transcript 1
                  3m0w I  2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFP 94
                                    11        21        31        41        51        61        71        81        91   

Chain J from PDB  Type:PROTEIN  Length:89
 aligned with S10A4_HUMAN | P26447 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:92
                                    11        21        31        41        51        61        71        81        91  
           S10A4_HUMAN    2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGF 93
               SCOP domains d3m0wj_ J: Calcyclin (S100)                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---S_100-3m0wJ01 J:5-46                      ----------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---S_100-3m0wJ02 J:5-46                      ----------------------------------------------- Pfam domains (2)
           Pfam domains (3) ---S_100-3m0wJ03 J:5-46                      ----------------------------------------------- Pfam domains (3)
           Pfam domains (4) ---S_100-3m0wJ04 J:5-46                      ----------------------------------------------- Pfam domains (4)
           Pfam domains (5) ---S_100-3m0wJ05 J:5-46                      ----------------------------------------------- Pfam domains (5)
           Pfam domains (6) ---S_100-3m0wJ06 J:5-46                      ----------------------------------------------- Pfam domains (6)
           Pfam domains (7) ---S_100-3m0wJ07 J:5-46                      ----------------------------------------------- Pfam domains (7)
           Pfam domains (8) ---S_100-3m0wJ08 J:5-46                      ----------------------------------------------- Pfam domains (8)
           Pfam domains (9) ---S_100-3m0wJ09 J:5-46                      ----------------------------------------------- Pfam domains (9)
          Pfam domains (10) ---S_100-3m0wJ10 J:5-46                      ----------------------------------------------- Pfam domains (10)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh....---.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------EF_HAND_2  PDB: J:50-85             -------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------S100_CABP  PDB: J:58-7-------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------EF_HAND_1    ------------------ PROSITE (3)
               Transcript 1 Exon 1.4c  PDB: J:2-46 UniProt: 1-47          Exon 1.5c  PDB: J:50-93 UniProt: 48-101        Transcript 1
                  3m0w J  2 ACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFL---TDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGF 93
                                    11        21        31        41    |   51        61        71        81        91  
                                                                       46  50                                           

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3M0W)

(-) Pfam Domains  (1, 10)

Asymmetric Unit
(-)
Clan: EF_hand (270)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (S10A4_HUMAN | P26447)
molecular function
    GO:0050786    RAGE receptor binding    Interacting selectively and non-covalently with the RAGE receptor, the receptor for advanced glycation end-products.
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0048306    calcium-dependent protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0001837    epithelial to mesenchymal transition    A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell.
    GO:0043123    positive regulation of I-kappaB kinase/NF-kappaB signaling    Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0043005    neuron projection    A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        S10A4_HUMAN | P264471m31 2lnk 2mrd 2q91 3c1v 3cga 3ko0 3zwh 4cfq 4cfr 4eto 4hsz 5lpu

(-) Related Entries Specified in the PDB File

2q91 SAME PROTEIN WITHOUT PCP