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(-) Description

Title :  STRUCTURAL BASIS FOR ELICITING A CYTOTOXIC EFFECT IN HER2-OVEREXPRESSING CANCER CELLS VIA BINDING TO THE EXTRACELLULAR DOMAIN OF HER2
 
Authors :  C. Jost, J. Schilling, A. Plueckthun
Date :  28 Oct 12  (Deposition) - 16 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Transferase-De Novo Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Jost, J. Schilling, R. Tamaskovic, M. Schwill, A. Honegger, A. Plueckthun
Structural Basis For Eliciting A Cytotoxic Effect In Her2-Overexpressing Cancer Cells Via Binding To The Extracellular Domain Of Her2.
Structure V. 21 1 2013
PubMed-ID: 24095059  |  Reference-DOI: 10.1016/J.STR.2013.08.020

(-) Compounds

Molecule 1 - RECEPTOR TYROSINE-PROTEIN KINASE ERBB-2
    Chains: C
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFL
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: N-TERMINAL EXTRACELLULAR DOMAIN I, UNP RESIDUES 24-219
    Gene: ERBB2, HER2, MLN19, NEU, NGL
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: METASTATIC LYMPH NODE GENE 19 PROTEIN, MLN 19, PROTO- ONCOGENE NEU, PROTO-ONCOGENE C-ERBB-2, TYROSINE KINASE-TYPE CELL SURFACE RECEPTOR HER2, P185ERBB2
 
Molecule 2 - DESIGNED ANKYRIN REPEAT PROTEIN 9_29
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: SYNTHETIC
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HRL)

(-) Sites  (0, 0)

(no "Site" information available for 4HRL)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1C:4 -C:31
2C:140 -C:170
3C:173 -C:182
4C:177 -C:190

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HRL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HRL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HRL)

(-) Exons   (0, 0)

(no "Exon" information available for 4HRL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hrl A   7 HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAHDFYGITPLHLAANFGHLEIVEVLLKHGADVNAFDYDNTPLHLAADAGHLEIVEVLLKYGADVNASDRDGHTPLHLAAREGHLEIVEVLLKNGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 168
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166  


Chain C from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............hhhhhhhhhh...ee...eeee.......hhhhh...ee...eeee.............ee....hhhh.eeeeee..................ee...eeeee......hhhhhhhhhhhhhhhh...eee................hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hrl C   2 QVCTGTDMKLRLPPTHLDMLRHLYQGCQVVQGNLELTYLPTDASLSFLQDIQEVQGYVLIAHNQVRQVPLQRLRIVRGTQLFEDNYALAVLDNGDSPGGLRELQLRSLTEILKGGVLIQRNPQLCYQDTILWKDIFHKNNQLALTLIDTCHPCSPMCSRCWGESSEDCQ 191
                                    11  |||   24        34        44        54        64        74        84        94    || 115       125       135       145       155       170      |182         
                                       14||                                                                              99|                                                  164|    177|           
                                        17|                                                                              111                                                   170     180           
                                         19
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HRL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HRL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HRL)

(-) Gene Ontology  (73, 73)

Asymmetric/Biological Unit(hide GO term definitions)

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  4hrl
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  ERBB2_HUMAN | P04626
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ERBB2_HUMAN | P04626: 1mfg 1mfl 1mw4 1n8z 1ovc 1qr1 1s78 2a91 2jwa 2ks1 2l4k 2n2a 3be1 3h3b 3mzw 3n85 3pp0 3rcd 3wlw 3wsq 4gfu 4hrm 4hrn 4nnd 5k33 5kwg

(-) Related Entries Specified in the PDB File

1n8z 1s78 3h3b 3mzw 4hrm 4hrn