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(-)Asym./Biol. Unit
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(-) Description

Title :  I2 FAB (UNBOUND) FROM CH65-CH67 LINEAGE
 
Authors :  A. G. Schmidt, S. C. Harrison
Date :  14 Oct 12  (Deposition) - 21 Nov 12  (Release) - 16 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  J,N
Keywords :  Fab Fragment, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. G. Schmidt, H. Xu, A. R. Khan, T. O'Donnell, S. Khurana, L. R. King, J. Manischewitz, H. Golding, P. Suphaphiphat, A. Carfi, E. C. Settembre, P. R. Dormitzer, T. B. Kepler, R. Zhang, M. A. Moody, B. F. Haynes, H. X. Liao, D. E. Shaw, S. C. Harrison
Preconfiguration Of The Antigen-Binding Site During Affinit Maturation Of A Broadly Neutralizing Influenza Virus Antibody.
Proc. Natl. Acad. Sci. Usa V. 110 264 2013
PubMed-ID: 23175789  |  Reference-DOI: 10.1073/PNAS.1218256109

(-) Compounds

Molecule 1 - I2 HEAVY CHAIN
    Chains: J
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: FAB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - I2 LIGHT CHAIN
    Chains: N
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Fragment: FAB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : JN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HK3)

(-) Sites  (0, 0)

(no "Site" information available for 4HK3)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1J:22 -J:96
2J:153 -J:209
3N:22 -N:87
4N:136 -N:195

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Glu J:102 -Pro J:103
2Phe J:159 -Pro J:160
3Glu J:161 -Pro J:162
4Tyr N:142 -Pro N:143

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HK3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HK3)

(-) Exons   (0, 0)

(no "Exon" information available for 4HK3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain J from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhh.eeeeeeee......eeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeeee.............ee...eeeee........eeeee.....ee..eeeeeee.......ee........eee...ee.....eeeeeee.ee.....eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hk3 J   1 QVQLVQSGAEVKKPGASVKVSCKASGYTFTDYYIHWVRQAPGQGLEWMGWIHPNSGGTNYAQKFQGWVTMTRDTSISTAYMELSRLRSDDTAVYYCARGGLEPRSVDYYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSQTYICNVNHKPSNTKVDKRVEPK 227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140||     155       165       175       185       195    || 209       219        
                                                                                                                                                                      141|                                                  200|                      
                                                                                                                                                                       147                                                   205                      


Chain N from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains d4hk3n1 N:1-109 automated matches                                                                            d4hk3n2 N:110-210 automated matches                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eee......eeeeee..hhhhh..eeeee......eeee.............eeeeee..eeeeee...hhhhh.eeeeeeee....eeee...eeee.........eeeee..hhhhhhh...eeeeeeeee.....eeeeee..ee....eee...ee.....eeeeeeee.hhhhhhhh..eeeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hk3 N   1 QSVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDHVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP 210
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HK3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HK3)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 4hk3)
 
  Cis Peptide Bonds
    Glu J:102 - Pro J:103   [ RasMol ]  
    Glu J:161 - Pro J:162   [ RasMol ]  
    Phe J:159 - Pro J:160   [ RasMol ]  
    Tyr N:142 - Pro N:143   [ RasMol ]  
 

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  4hk3
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  Q8N355_HUMAN | Q8N355
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q8N355_HUMAN | Q8N355: 2dd8 5ugy
UniProtKB/TrEMBL
        Q8N355_HUMAN | Q8N355: 4fqq 4hk0

(-) Related Entries Specified in the PDB File

4hk0 4hkb 4hkx