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(-) Description

Title :  EAL DOMAIN OF PHOSPHODIESTERASE PDEA IN COMPLEX WITH C-DI-GMP AND CA++
 
Authors :  E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, C. Massa, T. S A. Joachimiak, W. F. Anderson, Midwest Center For Structural Gen (Mcsg)
Date :  12 Oct 12  (Deposition) - 31 Oct 12  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Eal Domain, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, C. Massa, T. Schirmer, A. Joachimiak, W. F. Anderson
Crystal Structure Of Eal Domain From Caulobacter Crescentus In Complex With C-Di-Gmp And Ca
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GGDEF FAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: 943316, CC_3396
    Organism Scientific: CAULOBACTER CRESCENTUS
    Organism Taxid: 190650
    Strain: ATCC 19089 / CB15

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1C2E1Ligand/Ion9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO-1,9-DIHYDRO-6H-PURIN-6-ONE)
2CA2Ligand/IonCALCIUM ION
3MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:323 , ASN A:384 , GLU A:416 , ASP A:446 , C2E A:603 , HOH A:712BINDING SITE FOR RESIDUE CA A 601
2AC2SOFTWAREASP A:446 , ASP A:447 , ASP A:469 , GLU A:503 , C2E A:603BINDING SITE FOR RESIDUE CA A 602
3AC3SOFTWAREGLN A:309 , GLU A:323 , LEU A:325 , ALA A:326 , ARG A:327 , PRO A:338 , LEU A:342 , MSE A:358 , ASN A:384 , SER A:386 , ASP A:446 , ARG A:470 , GLU A:503 , GLY A:504 , GLU A:506 , GLY A:524 , PHE A:525 , CA A:601 , CA A:602 , HOH A:710 , HOH A:715 , HOH A:733 , HOH A:752 , HOH A:778 , HOH A:782 , HOH A:797 , HOH A:802 , HOH A:825 , HOH A:829 , HOH A:833 , HOH A:851BINDING SITE FOR RESIDUE C2E A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HJF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HJF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HJF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HJF)

(-) Exons   (0, 0)

(no "Exon" information available for 4HJF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh....eeeeeeeeee.....eeeeeeeeeeee...eeehhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......eeeee.........hhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhh...eeeehhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhh...eee........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hjf A 285 GLSRLALEADLRGAIGRGEITPYFQPIVRLSTGALSGFEALARWIHPRRGmLPPDEFLPLIEEmGLmSELGAHmmHAAAQQLSTWRAAHPAmGNLTVSVNLSTGEIDRPGLVADVAETLRVNRLPRGALKLEVTESDImRDPERAAVILKTLRDAGAGLALDDFGTGFSSLSYLTRLPFDTLKIDRYFVRTmGNNAGSAKIVRSVVKLGQDLDLEVVAEGVENAEmAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEAYVDG 547
                                   294       304       314       324       334|      344   |  |354   ||  364       374 |     384       394       404       414       424       434       444       454       464       474 |     484       494       504     | 514       524       534       544   
                                                                            335-MSE      348-MSE     ||              376-MSE                                        423-MSE                                              476-MSE                           510-MSE                                 
                                                                                            351-MSE  ||                                                                                                                                                                                            
                                                                                                   358-MSE                                                                                                                                                                                         
                                                                                                    359-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HJF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HJF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HJF)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9A310_CAUCR | Q9A310: 3u2a
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        Q9A310_CAUCR | Q9A310: 3s83 3u2e

(-) Related Entries Specified in the PDB File

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