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(-) Description

Title :  EAL DOMAIN OF PHOSPHODIESTERASE PDEA
 
Authors :  E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, C. Massa, T. S A. Joachimiak, W. F. Anderson, Midwest Center For Structural Gen (Mcsg)
Date :  27 May 11  (Deposition) - 29 Jun 11  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.34
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, C. Massa, T. Schirmer, A. Joachimiak, W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
Crystal Structure Of Eal Domain From Caulobacter Crescentus Cb15
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GGDEF FAMILY PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG7
    Expression System StrainBL21MAGIC
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentEAL DOMAIN RESIDUES 289-547
    GeneCC_3396
    Organism ScientificCAULOBACTER CRESCENTUS
    Organism Taxid155892
    StrainCB15

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric/Biological Unit (2, 11)
No.NameCountTypeFull Name
1K2Ligand/IonPOTASSIUM ION
2MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:320 , TYR A:521 , ASP A:546 , HOH A:560 , HOH A:709 , HOH A:710BINDING SITE FOR RESIDUE K A 548
2AC2SOFTWAREGLU A:323 , ASN A:384 , GLU A:416 , ASP A:446 , HOH A:735 , HOH A:736BINDING SITE FOR RESIDUE K A 549

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3S83)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3S83)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3S83)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3S83)

(-) Exons   (0, 0)

(no "Exon" information available for 3S83)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:256
 aligned with Q9A310_CAUCR | Q9A310 from UniProtKB/TrEMBL  Length:555

    Alignment length:259
                                   298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538         
         Q9A310_CAUCR   289 LALEADLRGAIGRGEITPYFQPIVRLSTGALSGFEALARWIHPRRGMLPPDEFLPLIEEMGLMSELGAHMMHAAAQQLSTWRAAHPAMGNLTVSVNLSTGEIDRPGLVADVAETLRVNRLPRGALKLEVTESDIMRDPERAAVILKTLRDAGAGLALDDFGTGFSSLSYLTRLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVVAEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEAYVDG 547
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---EAL-3s83A01 A:292-530                                                                                                                                                                                                                          ----------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeee...eeehhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......eeeee...hhhhh.hhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhhhhh.eeeee..---hhhhhhhhhh...eeeehhhhhhhh..hhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh..ee.........hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s83 A 289 LALEADLRGAIGRGEITPYFQPIVRLSTGALSGFEALARWIHPRRGmLPPDEFLPLIEEmGLmSELGAHmmHAAAQQLSTWRAAHPAmGNLTVSVNLSTGEIDRPGLVADVAETLRVNRLPRGALKLEVTESDImRDPERAAVILKTLRDAGAGLALDDF---FSSLSYLTRLPFDTLKIDRYFVRTmGNNAGSAKIVRSVVKLGQDLDLEVVAEGVENAEmAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEAYVDG 547
                                   298       308       318       328      |338       348  |    358|      368       378       388       398       408       418    |  428       438       448   |   458       468       478       488       498       508 |     518       528       538         
                                                                        335-MSE      348-MSE     ||              376-MSE                                        423-MSE                  448 452                     476-MSE                           510-MSE                                 
                                                                                        351-MSE  ||                                                                                                                                                                                            
                                                                                               358-MSE                                                                                                                                                                                         
                                                                                                359-MSE                                                                                                                                                                                        

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3S83)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3S83)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9A310_CAUCR | Q9A310)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9A310_CAUCR | Q9A3103u2a
UniProtKB/TrEMBL
        Q9A310_CAUCR | Q9A3103u2e 4hjf

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3S83)